POPTR_0003s11360 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0003s11360 T278244_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK21166.1
M01281_2.00
Cannabis sativa
HACCWAMY

RKTWGGTD
PBM
Lambert et al.(2019)
pTH11255
0.819 0.914
MYB99
M07151_2.00
Arabidopsis thaliana
NYYYACCWAMYHH

DDRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB99_col_a
0.760 0.817
MYB99
M07152_2.00
Arabidopsis thaliana
YHYACCTAMYH

DRKTAGGTRDR
Dap-seq
OMalley et al.(2016)
MYB99_colamp_a
0.760 0.817
MYB43
M07127_2.00
Arabidopsis thaliana
NYYYACCWAMYWH

DWRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB43_col_a
0.758 0.860
MYB83
M01073_2.00
Arabidopsis thaliana
YACCHACC

GGTDGGTR
PBM
Sullivan et al.(2014)
pTH7140
0.675 0.634
MYB83
M07066_2.00
Arabidopsis thaliana
YCACCAACHNH

DNDGTTGGTGR
Dap-seq
OMalley et al.(2016)
MYB83_col_a
0.675 0.634
MYB83
M07067_2.00
Arabidopsis thaliana
NCACCWAMCDNHNNN

NNNDNHGKTWGGTGN
Dap-seq
OMalley et al.(2016)
MYB83_colamp_a
0.675 0.634
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s11360.1 Myb 14 61
POPTR_0003s11360.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

323 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACAC_0000753701 Angiostrongylus cantonensis ACAC_0000753701 N 0.000
ACOC_0000723101 Angiostrongylus costaricensis ACOC_0000723101 N 0.000
ALUE_0000597001 Ascaris lumbricoides ALUE_0000597001 N 0.000
ANCCAN_23934 Ancylostoma caninum ANCCAN_23934 N 0.000
ANCCEY_04025 Ancylostoma ceylanicum ANCCEY_04025 N 0.000
ASIM_0001035401 Anisakis simplex ASIM_0001035401 N 0.000
ASU_05070 Ascaris suum ASU_05070 N 0.000
Bm4127 Brugia malayi Bm4127 N 0.000
CBG02192 Caenorhabditis briggsae CBG02192 N 0.000
CBN28626 Caenorhabditis brenneri CBN28626 N 0.000
CJA08234 Caenorhabditis japonica CJA08234 N 0.000
CRE29852 Caenorhabditis remanei CRE29852 N 0.000
DICVIV_02118 Dictyocaulus viviparus DICVIV_02118 N 0.000
ENSGGOG00000022323 Gorilla gorilla ENSGGOG00000022323 N 0.000
GB48278 Apis mellifera GB48278 N 0.000
genemark-nMf.1.1.scaf02796-processed-gene-0.1 Meloidogyne floridensis genemark-nMf.1.1.scaf02796-processed-gene-0.1 N 0.000
HCOI00434500 Haemonchus contortus HCOI00434500 N 0.000
HCOI00964400 Haemonchus contortus HCOI00964400 N 0.000
HPBE_0002179101 Heligmosomoides bakeri HPBE_0002179101 N 0.000
HPLM_0002150501 Haemonchus placei HPLM_0002150501 N 0.000
L596_g774 Steinernema carpocapsae L596_g774 N 0.000
L889_g7152 Steinernema feltiae L889_g7152 N 0.000
L898_g8665 Steinernema monticolum L898_g8665 N 0.000
LOAG_16800 Loa loa LOAG_16800 N 0.000
Minc12575 Meloidogyne incognita Minc12575 N 0.000
Minc17725 Meloidogyne incognita Minc17725 N 0.000
Minc18316 Meloidogyne incognita Minc18316 N 0.000
NECAME_06295 Necator americanus NECAME_06295 N 0.000
OESDEN_11868 Oesophagostomum dentatum OESDEN_11868 N 0.000
PEQ_0000869901 Parascaris equorum PEQ_0000869901 N 0.000
PTRK_0000626000 Parastrongyloides trichosuri PTRK_0000626000 N 0.000
RSKR_0000428100 Rhabditophanes kr3021 RSKR_0000428100 N 0.000
SCUD_0001868801 Schistosoma curassoni SCUD_0001868801 N 0.000
SMUV_0000791601 Syphacia muris SMUV_0000791601 N 0.000
SPAL_0000645700 Strongyloides papillosus SPAL_0000645700 N 0.000
sptf-1 Caenorhabditis elegans WBGene00009743 N 0.000
SSTP_0000770600 Strongyloides stercoralis SSTP_0000770600 N 0.000
SVE_1810500 Strongyloides venezuelensis SVE_1810500 N 0.000
WBGene00237705 Onchocerca volvulus WBGene00237705 N 0.000