POPTR_0003s16150 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0003s16150 T278250_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ASR3
M07053_2.00
Arabidopsis thaliana
DNNNNHHWNDRCCCTWAW

WTWAGGGYHNWDDNNNNH
Dap-seq
OMalley et al.(2016)
AT2G33550_col_a
0.901 0.978
ASR3
M07054_2.00
Arabidopsis thaliana
NHWDDTRCCCTWMW

WKWAGGGYAHHWDN
Dap-seq
OMalley et al.(2016)
AT2G33550_colamp_a
0.901 0.978
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0003s16150.1 Myb 42 109
POPTR_0003s16150.2 Myb 42 109

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action