POPTR_0006s24660 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0006s24660 T278314_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
fgenesh1_pg.scaffold_70000111
M02342_2.00
Physcomitrella patens
NNHNATCBN

NVGATNDNN
PBM
Weirauch et al.(2014)
pTH8492
0.661 0.878
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0006s24660.1 Myb 99 140

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SapurV1A.0086s0190 Salix purpurea SapurV1A.0086s0190 I 0.731
GLYMA08G03330 Glycine max GLYMA08G03330 I 0.710
TCM_037276 Theobroma cacao TCM_037276 I 0.710
TCM_037687 Theobroma cacao TCM_037687 I 0.710
Gorai.010G081800 Gossypium raimondii Gorai.010G081800 I 0.710
GLYMA05G36290 Glycine max GLYMA05G36290 I 0.710
Ca_05889 Cicer arietinum Ca_05889 I 0.710
30147.m014337 Ricinus communis 30147.m014337 I 0.702
chr4.CM0004.450.nd Lotus japonicus chr4.CM0004.450.nd I 0.702
TCM_014838 Theobroma cacao TCM_014838 I 0.683
Solyc08g065380.2 Solanum lycopersicum Solyc08g065380.2 I 0.671
F775_07352 Aegilops tauschii F775_07352 I 0.664
fgenesh1_pg.scaffold_70000111 Physcomitrella patens fgenesh1_pg.scaffold_70000111 D 0.661
Bostr.10273s0355 Boechera stricta Bostr.10273s0355 I 0.661
fgenesh1_pg.scaffold_66000048 Physcomitrella patens fgenesh1_pg.scaffold_66000048 I 0.661
Eucgr.K02897 Eucalyptus grandis Eucgr.K02897 I 0.661
Aquca_002_00384 Aquilegia coerulea Aquca_002_00384 I 0.661
Eucgr.B02575 Eucalyptus grandis Eucgr.B02575 I 0.661
Ciclev10032167m.g Citrus clementina Ciclev10032167m.g I 0.661
Lus10013289.g Linum usitatissimum Lus10013289.g I 0.661
SapurV1A.1274s0030 Salix purpurea SapurV1A.1274s0030 I 0.661
Thhalv10019007m.g Eutrema salsugineum Thhalv10019007m.g I 0.661
PDK_20s1532501g001 Phoenix dactylifera PDK_20s1532501g001 I 0.661
SapurV1A.0161s0200 Salix purpurea SapurV1A.0161s0200 I 0.661
orange1.1g021351m.g Citrus sinensis orange1.1g021351m.g I 0.661
fgenesh1_pg.scaffold_66000046 Physcomitrella patens fgenesh1_pg.scaffold_66000046 I 0.661
Lus10027781.g Linum usitatissimum Lus10027781.g I 0.661
Lus10030813.g Linum usitatissimum Lus10030813.g I 0.661
Gorai.007G378300 Gossypium raimondii Gorai.007G378300 I 0.661
cassava22868.valid.m1 Manihot esculenta cassava22868.valid.m1 I 0.661
MLOC_79329 Hordeum vulgare MLOC_79329 I 0.661
PGSC0003DMG400000340 Solanum tuberosum PGSC0003DMG400000340 I 0.661
POPTR_0006s15480 Populus trichocarpa POPTR_0006s15480 I 0.661
GSMUA_Achr5G09240_001 Musa acuminata GSMUA_Achr5G09240_001 I 0.661
GLYMA02G03020 Glycine max GLYMA02G03020 I 0.661
AT1G70000 Arabidopsis thaliana AT1G70000 I 0.661
fgenesh2_kg.2__1257__AT1G70000.1 Arabidopsis lyrata fgenesh2_kg.2__1257__AT1G70000.1 I 0.661
GLYMA01G04530 Glycine max GLYMA01G04530 I 0.661
Solyc12g008800.1 Solanum lycopersicum Solyc12g008800.1 I 0.661
TCM_010118 Theobroma cacao TCM_010118 I 0.661
cassava4591.m1 Manihot esculenta cassava4591.m1 I 0.661
Cucsa.285620 Cucumis sativus Cucsa.285620 I 0.661
Cucsa.361050 Cucumis sativus Cucsa.361050 I 0.661
AMTR_s00074p00097250 Amborella trichopoda AMTR_s00074p00097250 I 0.661
29736.m002089 Ricinus communis 29736.m002089 I 0.661
VIT_01s0026g01050 Vitis vinifera VIT_01s0026g01050 I 0.661
VIT_11s0016g02410 Vitis vinifera VIT_11s0016g02410 I 0.661
Cla000916 Citrullus lanatus Cla000916 I 0.661
estExt_fgenesh1_pg.C_1880060 Physcomitrella patens estExt_fgenesh1_pg.C_1880060 I 0.661