CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0006s24660
(
Populus trichocarpa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
POPTR_0006s24660
T278314_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
fgenesh1_pg.scaffold_70000111
M02342_2.00
Physcomitrella patens
NNHNATCBN
NVGATNDNN
PBM
Weirauch et al.(2014)
pTH8492
0.661
0.878
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0006s24660.1
Myb
99
140
SVPWTEEEHRIFLLGLEKLGKGDWRGISRNFVTTRTPTQVGN
Links
Other
Myb/SANT
family TFs
Other
Populus trichocarpa
TFs
49 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0086s0190
Salix purpurea
SapurV1A.0086s0190
I
0.731
GLYMA08G03330
Glycine max
GLYMA08G03330
I
0.710
TCM_037276
Theobroma cacao
TCM_037276
I
0.710
TCM_037687
Theobroma cacao
TCM_037687
I
0.710
Gorai.010G081800
Gossypium raimondii
Gorai.010G081800
I
0.710
GLYMA05G36290
Glycine max
GLYMA05G36290
I
0.710
Ca_05889
Cicer arietinum
Ca_05889
I
0.710
30147.m014337
Ricinus communis
30147.m014337
I
0.702
chr4.CM0004.450.nd
Lotus japonicus
chr4.CM0004.450.nd
I
0.702
TCM_014838
Theobroma cacao
TCM_014838
I
0.683
Solyc08g065380.2
Solanum lycopersicum
Solyc08g065380.2
I
0.671
F775_07352
Aegilops tauschii
F775_07352
I
0.664
fgenesh1_pg.scaffold_70000111
Physcomitrella patens
fgenesh1_pg.scaffold_70000111
D
0.661
Bostr.10273s0355
Boechera stricta
Bostr.10273s0355
I
0.661
fgenesh1_pg.scaffold_66000048
Physcomitrella patens
fgenesh1_pg.scaffold_66000048
I
0.661
Eucgr.K02897
Eucalyptus grandis
Eucgr.K02897
I
0.661
Aquca_002_00384
Aquilegia coerulea
Aquca_002_00384
I
0.661
Eucgr.B02575
Eucalyptus grandis
Eucgr.B02575
I
0.661
Ciclev10032167m.g
Citrus clementina
Ciclev10032167m.g
I
0.661
Lus10013289.g
Linum usitatissimum
Lus10013289.g
I
0.661
SapurV1A.1274s0030
Salix purpurea
SapurV1A.1274s0030
I
0.661
Thhalv10019007m.g
Eutrema salsugineum
Thhalv10019007m.g
I
0.661
PDK_20s1532501g001
Phoenix dactylifera
PDK_20s1532501g001
I
0.661
SapurV1A.0161s0200
Salix purpurea
SapurV1A.0161s0200
I
0.661
orange1.1g021351m.g
Citrus sinensis
orange1.1g021351m.g
I
0.661
fgenesh1_pg.scaffold_66000046
Physcomitrella patens
fgenesh1_pg.scaffold_66000046
I
0.661
Lus10027781.g
Linum usitatissimum
Lus10027781.g
I
0.661
Lus10030813.g
Linum usitatissimum
Lus10030813.g
I
0.661
Gorai.007G378300
Gossypium raimondii
Gorai.007G378300
I
0.661
cassava22868.valid.m1
Manihot esculenta
cassava22868.valid.m1
I
0.661
MLOC_79329
Hordeum vulgare
MLOC_79329
I
0.661
PGSC0003DMG400000340
Solanum tuberosum
PGSC0003DMG400000340
I
0.661
POPTR_0006s15480
Populus trichocarpa
POPTR_0006s15480
I
0.661
GSMUA_Achr5G09240_001
Musa acuminata
GSMUA_Achr5G09240_001
I
0.661
GLYMA02G03020
Glycine max
GLYMA02G03020
I
0.661
AT1G70000
Arabidopsis thaliana
AT1G70000
I
0.661
fgenesh2_kg.2__1257__AT1G70000.1
Arabidopsis lyrata
fgenesh2_kg.2__1257__AT1G70000.1
I
0.661
GLYMA01G04530
Glycine max
GLYMA01G04530
I
0.661
Solyc12g008800.1
Solanum lycopersicum
Solyc12g008800.1
I
0.661
TCM_010118
Theobroma cacao
TCM_010118
I
0.661
cassava4591.m1
Manihot esculenta
cassava4591.m1
I
0.661
Cucsa.285620
Cucumis sativus
Cucsa.285620
I
0.661
Cucsa.361050
Cucumis sativus
Cucsa.361050
I
0.661
AMTR_s00074p00097250
Amborella trichopoda
AMTR_s00074p00097250
I
0.661
29736.m002089
Ricinus communis
29736.m002089
I
0.661
VIT_01s0026g01050
Vitis vinifera
VIT_01s0026g01050
I
0.661
VIT_11s0016g02410
Vitis vinifera
VIT_11s0016g02410
I
0.661
Cla000916
Citrullus lanatus
Cla000916
I
0.661
estExt_fgenesh1_pg.C_1880060
Physcomitrella patens
estExt_fgenesh1_pg.C_1880060
I
0.661