POPTR_0008s17350 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0008s17350 T278357_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATMYB121
M07091_2.00
Arabidopsis thaliana
NYNWACCTAMYHHH

DDDRKTAGGTWNRN
Dap-seq
OMalley et al.(2016)
MYB121_col_a
0.717 0.796
MYB59
M00883_2.00
Arabidopsis thaliana
NKACCTAAYN

NRTTAGGTMN
PBM
Franco-Zorrilla et al.(2014)
MYB59
0.714 0.710
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s17350.1 Myb 22 69
POPTR_0008s17350.1 Myb 75 120

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

Invalid Input OrderBy

309 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action