AtMYB40 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0008s18110 T278358_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB99
M07151_2.00
Arabidopsis thaliana
NYYYACCWAMYHH

DDRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB99_col_a
0.662 0.667
MYB99
M07152_2.00
Arabidopsis thaliana
YHYACCTAMYH

DRKTAGGTRDR
Dap-seq
OMalley et al.(2016)
MYB99_colamp_a
0.662 0.667
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s18110.1 Myb 14 61
POPTR_0008s18110.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

133 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MYB99 Arabidopsis thaliana AT5G62320 D 0.662
Pm015564 Prunus mume Pm015564 I 0.719
Aquca_011_00323 Aquilegia coerulea Aquca_011_00323 I 0.744
Aquca_013_00661 Aquilegia coerulea Aquca_013_00661 I 0.683
Bostr.0568s0574 Boechera stricta Bostr.0568s0574 I 0.662
Ciclev10005666m.g Citrus clementina Ciclev10005666m.g I 0.681
Ciclev10017764m.g Citrus clementina Ciclev10017764m.g I 0.741
Ciclev10021695m.g Citrus clementina Ciclev10021695m.g I 0.681
Eucgr.D02014 Eucalyptus grandis Eucgr.D02014 I 0.681
Eucgr.I01698 Eucalyptus grandis Eucgr.I01698 I 0.755
Eucgr.J02279 Eucalyptus grandis Eucgr.J02279 I 0.762
evm.TU.supercontig_1097.3 Carica papaya evm.TU.supercontig_1097.3 I 0.749
evm.TU.supercontig_3.300 Carica papaya evm.TU.supercontig_3.300 I 0.681
gene28021-v1.0-hybrid Fragaria vesca gene28021-v1.0-hybrid I 0.735
gene32268-v1.0-hybrid Fragaria vesca gene32268-v1.0-hybrid I 0.681
Gorai.001G268000 Gossypium raimondii Gorai.001G268000 I 0.728
Aquca_011_00322 Aquilegia coerulea Aquca_011_00322 I 0.705
mgf025004m Mimulus guttatus mgf025004m I 0.722
mgf018940m Mimulus guttatus mgf018940m I 0.765
Pm019472 Prunus mume Pm019472 I 0.670
Pm023573 Prunus mume Pm023573 I 0.681
29929.m004749 Ricinus communis 29929.m004749 I 0.782
30190.m011004 Ricinus communis 30190.m011004 I 0.681
cassava15064.m1 Manihot esculenta cassava15064.m1 I 0.813
cassava17364.m1 Manihot esculenta cassava17364.m1 I 0.749
cassava2058.valid.m1 Manihot esculenta cassava2058.valid.m1 I 0.681
cassava21367.m1 Manihot esculenta cassava21367.m1 I 0.670
cassava33331.m1 Manihot esculenta cassava33331.m1 I 0.681
cassava3745.m1 Manihot esculenta cassava3745.m1 I 0.743
cassava47045.m1 Manihot esculenta cassava47045.m1 I 0.681
Cucsa.156340 Cucumis sativus Cucsa.156340 I 0.756
Cucsa.302180 Cucumis sativus Cucsa.302180 I 0.664
mgf017719m Mimulus guttatus mgf017719m I 0.664
Gorai.003G168100 Gossypium raimondii Gorai.003G168100 I 0.681
Gorai.004G064100 Gossypium raimondii Gorai.004G064100 I 0.662
Pavir.Ab02913 Panicum virgatum Pavir.Ab02913 I 0.692
Pavir.Ba01239 Panicum virgatum Pavir.Ba01239 I 0.680
Pavir.Bb02654 Panicum virgatum Pavir.Bb02654 I 0.680
Pavir.Da01229 Panicum virgatum Pavir.Da01229 I 0.668
SapurV1A.0045s0090 Salix purpurea SapurV1A.0045s0090 I 0.681
SapurV1A.0102s0470 Salix purpurea SapurV1A.0102s0470 I 0.683
SapurV1A.0136s0070 Salix purpurea SapurV1A.0136s0070 I 0.762
SapurV1A.0206s0260 Salix purpurea SapurV1A.0206s0260 I 0.851
SapurV1A.0367s0020 Salix purpurea SapurV1A.0367s0020 I 0.711
SapurV1A.0456s0310 Salix purpurea SapurV1A.0456s0310 I 0.711
SapurV1A.0634s0020 Salix purpurea SapurV1A.0634s0020 I 0.681
SapurV1A.1318s0060 Salix purpurea SapurV1A.1318s0060 I 0.683
Thhalv10014086m.g Eutrema salsugineum Thhalv10014086m.g I 0.665
PK08857.1 Cannabis sativa PK08857.1 I 0.677
Pavir.Aa00435 Panicum virgatum Pavir.Aa00435 I 0.685
orange1.1g024849m.g Citrus sinensis orange1.1g024849m.g I 0.681
orange1.1g024441m.g Citrus sinensis orange1.1g024441m.g I 0.681
Gorai.004G201900 Gossypium raimondii Gorai.004G201900 I 0.681
Gorai.006G037500 Gossypium raimondii Gorai.006G037500 I 0.774
Gorai.006G064000 Gossypium raimondii Gorai.006G064000 I 0.669
Gorai.007G074500 Gossypium raimondii Gorai.007G074500 I 0.718
Gorai.008G238800 Gossypium raimondii Gorai.008G238800 I 0.690
Lus10014569.g Linum usitatissimum Lus10014569.g I 0.725
Lus10024589.g Linum usitatissimum Lus10024589.g I 0.664
Lus10027197.g Linum usitatissimum Lus10027197.g I 0.681
Lus10032117.g Linum usitatissimum Lus10032117.g I 0.750
Lus10032226.g Linum usitatissimum Lus10032226.g I 0.664
Lus10038913.g Linum usitatissimum Lus10038913.g I 0.681
MDP0000241111 Malus domestica MDP0000241111 I 0.719
MDP0000303239 Malus domestica MDP0000303239 I 0.719
MDP0000682032 Malus domestica MDP0000682032 I 0.677
chr4.CM0126.370.nd Lotus japonicus chr4.CM0126.370.nd I 0.677
AMTR_s00049p00074250 Amborella trichopoda AMTR_s00049p00074250 I 0.715
GLYMA16G06900 Glycine max GLYMA16G06900 I 0.728
GLYMA17G14291 Glycine max GLYMA17G14291 I 0.681
GLYMA19G07830 Glycine max GLYMA19G07830 I 0.715
GRMZM2G055158 Zea mays GRMZM2G055158 I 0.685
GSMUA_Achr4G19880_001 Musa acuminata GSMUA_Achr4G19880_001 I 0.668
GSMUA_Achr6G06800_001 Musa acuminata GSMUA_Achr6G06800_001 I 0.748
GSMUA_Achr7G05680_001 Musa acuminata GSMUA_Achr7G05680_001 I 0.663
GSMUA_Achr7G12520_001 Musa acuminata GSMUA_Achr7G12520_001 I 0.665
MLOC_50944 Hordeum vulgare MLOC_50944 I 0.668
MTR_4g102380 Medicago truncatula MTR_4g102380 I 0.677
OB02G38450 Oryza brachyantha OB02G38450 I 0.685
OB08G22860 Oryza brachyantha OB08G22860 I 0.667
OGLUM02G32070 Oryza glumaepatula OGLUM02G32070 I 0.685
ORGLA02G0269000 Oryza glaberrima ORGLA02G0269000 I 0.685
GLYMA11G03300 Glycine max GLYMA11G03300 I 0.664
GLYMA05G06410 Glycine max GLYMA05G06410 I 0.712
BGIOSGA005676 Oryza indica BGIOSGA005676 I 0.685
Bo2g013190 Brassica oleracea Bo2g013190 I 0.665
Bo3g009730 Brassica oleracea Bo3g009730 I 0.664
Bo9g166000 Brassica oleracea Bo9g166000 I 0.673
Bra006249 Brassica rapa Bra006249 I 0.664
Bra008764 Brassica rapa Bra008764 I 0.673
BRADI3G36370 Brachypodium distachyon BRADI3G36370 I 0.662
BRADI3G56917 Brachypodium distachyon BRADI3G56917 I 0.668
BRADI4G29796 Brachypodium distachyon BRADI4G29796 I 0.681
F775_13107 Aegilops tauschii F775_13107 I 0.664
F775_17058 Aegilops tauschii F775_17058 I 0.668
MYB42 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002571 I 0.664
GLYMA01G42050 Glycine max GLYMA01G42050 I 0.694
GLYMA05G03780 Glycine max GLYMA05G03780 I 0.681
ORUFI02G33090 Oryza rufipogon ORUFI02G33090 I 0.685
OS02G0732600 Oryza sativa OS02G0732600 I 0.685
PGSC0003DMG400004780 Solanum tuberosum PGSC0003DMG400004780 I 0.681
Solyc08g079270.2 Solanum lycopersicum Solyc08g079270.2 I 0.681
TCM_014956 Theobroma cacao TCM_014956 I 0.681
TCM_016054 Theobroma cacao TCM_016054 I 0.681
TCM_017051 Theobroma cacao TCM_017051 I 0.774
Traes_5BL_D85C0EF26 Triticum aestivum Traes_5BL_D85C0EF26 I 0.664
Traes_5DL_46D39C394 Triticum aestivum Traes_5DL_46D39C394 I 0.664
TRIUR3_16495 Triticum urartu TRIUR3_16495 I 0.668
VIT_00s1241g00010 Vitis vinifera VIT_00s1241g00010 I 0.681
AtMYB40 Vitis vinifera VIT_14s0219g00050 I 0.765
VIT_16s0022g01210 Vitis vinifera VIT_16s0022g01210 I 0.681
Ca_08722 Cicer arietinum Ca_08722 I 0.677
Ca_19393 Cicer arietinum Ca_19393 I 0.742
Cla003626 Citrullus lanatus Cla003626 I 0.681
Cla004104 Citrullus lanatus Cla004104 I 0.756
Solyc05g014290.2 Solanum lycopersicum Solyc05g014290.2 I 0.738
Solyc02g093740.2 Solanum lycopersicum Solyc02g093740.2 I 0.765
Si030750m.g Setaria italica Si030750m.g I 0.680
PGSC0003DMG400011976 Solanum tuberosum PGSC0003DMG400011976 I 0.714
PGSC0003DMG400012648 Solanum tuberosum PGSC0003DMG400012648 I 0.765
POPTR_0001s07830 Populus trichocarpa POPTR_0001s07830 I 0.681
POPTR_0001s36220 Populus trichocarpa POPTR_0001s36220 I 0.729
POPTR_0003s11360 Populus trichocarpa POPTR_0003s11360 I 0.681
POPTR_0015s14600 Populus trichocarpa POPTR_0015s14600 I 0.694
Cla011736 Citrullus lanatus Cla011736 I 0.681
PRUPE_ppa011549mg Prunus persica PRUPE_ppa011549mg I 0.670
PRUPE_ppa021568mg Prunus persica PRUPE_ppa021568mg I 0.681
PRUPE_ppa026877mg Prunus persica PRUPE_ppa026877mg I 0.735
Sb02g024250 Sorghum bicolor Sb02g024250 I 0.661
Sb04g028850 Sorghum bicolor Sb04g028850 I 0.685
MYB99 Arabidopsis lyrata scaffold_802887.1 I 0.662
Si020225m.g Setaria italica Si020225m.g I 0.685
GSMUA_AchrUn_randomG11880_001 Musa acuminata GSMUA_AchrUn_randomG11880_001 N 0.687