POPTR_0010s18170 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0010s18170 T278397_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
ATY53
M07078_2.00
Arabidopsis thaliana
YBYACCWAMCDHHNNNNNNNN

NNNNNNNNDDHGKTWGGTRVR
Dap-seq
OMalley et al.(2016)
MYB67_col_a
0.761 0.815
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0010s18170.1 Myb 13 60
POPTR_0010s18170.1 Myb 66 110

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

208 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SapurV1A.0093s0250 Salix purpurea SapurV1A.0093s0250 I 0.846
SapurV1A.4138s0010 Salix purpurea SapurV1A.4138s0010 I 0.811
SapurV1A.0149s0490 Salix purpurea SapurV1A.0149s0490 I 0.811
GLYMA08G17371 Glycine max GLYMA08G17371 I 0.795
30125.m001257 Ricinus communis 30125.m001257 I 0.793
MTR_2g064160 Medicago truncatula MTR_2g064160 I 0.786
POPTR_0008s08110 Populus trichocarpa POPTR_0008s08110 I 0.781
Bo1g138990 Brassica oleracea Bo1g138990 I 0.778
ATY53 Arabidopsis lyrata scaffold_301452.1 I 0.778
Thhalv10022066m.g Eutrema salsugineum Thhalv10022066m.g I 0.778
Bra039339 Brassica rapa Bra039339 I 0.778
Bostr.3640s0047 Boechera stricta Bostr.3640s0047 I 0.778
chr3.CM0049.330.nc Lotus japonicus chr3.CM0049.330.nc I 0.777
cassava44228.m1 Manihot esculenta cassava44228.m1 I 0.770
Eucgr.E04323 Eucalyptus grandis Eucgr.E04323 I 0.770
Bo5g133210 Brassica oleracea Bo5g133210 I 0.769
Bra034738 Brassica rapa Bra034738 I 0.769
Gorai.004G268300 Gossypium raimondii Gorai.004G268300 I 0.766
ATY53 Vitis vinifera VIT_19s0085g00940 I 0.763
TCM_005977 Theobroma cacao TCM_005977 I 0.762
Carubv10015099m.g Capsella rubella Carubv10015099m.g I 0.761
ATY53 Arabidopsis thaliana AT3G12720 D 0.761
cassava33147.m1 Manihot esculenta cassava33147.m1 I 0.761
Cagra.5641s0037 Capsella grandiflora Cagra.5641s0037 I 0.761
27956.m000359 Ricinus communis 27956.m000359 I 0.760
LjT35F06.10.nd Lotus japonicus LjT35F06.10.nd I 0.756
Pm010927 Prunus mume Pm010927 I 0.755
SapurV1A.0122s0490 Salix purpurea SapurV1A.0122s0490 I 0.754
POPTR_0003s15440 Populus trichocarpa POPTR_0003s15440 I 0.751
GLYMA15G41810 Glycine max GLYMA15G41810 I 0.750
cassava26068.m1 Manihot esculenta cassava26068.m1 I 0.740
POPTR_0001s12240 Populus trichocarpa POPTR_0001s12240 I 0.739
MDP0000157506 Malus domestica MDP0000157506 I 0.738
Ciclev10018009m.g Citrus clementina Ciclev10018009m.g I 0.735
orange1.1g039070m.g Citrus sinensis orange1.1g039070m.g I 0.735
TCM_033645 Theobroma cacao TCM_033645 I 0.733
MDP0000226667 Malus domestica MDP0000226667 I 0.731
SapurV1A.0236s0090 Salix purpurea SapurV1A.0236s0090 I 0.730
MYB26 Populus trichocarpa POPTR_0001s20370 I 0.729
Pm013322 Prunus mume Pm013322 I 0.729
Ca_10069 Cicer arietinum Ca_10069 I 0.729
Bo1g134790 Brassica oleracea Bo1g134790 I 0.729
PK22855.1 Cannabis sativa PK22855.1 I 0.729
Thhalv10021042m.g Eutrema salsugineum Thhalv10021042m.g I 0.729
PRUPE_ppa015032mg Prunus persica PRUPE_ppa015032mg I 0.729
GLYMA13G42431 Glycine max GLYMA13G42431 I 0.729
Ca_02730 Cicer arietinum Ca_02730 I 0.729
Gorai.011G063900 Gossypium raimondii Gorai.011G063900 I 0.729
Lus10015608.g Linum usitatissimum Lus10015608.g I 0.729
Bra021515 Brassica rapa Bra021515 I 0.729
MDP0000148894 Malus domestica MDP0000148894 I 0.729
SapurV1A.0177s0130 Salix purpurea SapurV1A.0177s0130 I 0.729
Eucgr.F03143 Eucalyptus grandis Eucgr.F03143 I 0.729
GLYMA07G01050 Glycine max GLYMA07G01050 I 0.729
GLYMA08G20440 Glycine max GLYMA08G20440 I 0.729
TCM_029065 Theobroma cacao TCM_029065 I 0.729
cassava11527.m1 Manihot esculenta cassava11527.m1 I 0.727
cassava34928.m1 Manihot esculenta cassava34928.m1 I 0.726
cassava176.valid.m1 Manihot esculenta cassava176.valid.m1 I 0.726
Aquca_020_00444 Aquilegia coerulea Aquca_020_00444 I 0.725
Solyc03g121740.1 Solanum lycopersicum Solyc03g121740.1 I 0.722
VIT_01s0010g00410 Vitis vinifera VIT_01s0010g00410 I 0.720
Gorai.009G142200 Gossypium raimondii Gorai.009G142200 I 0.719
GLYMA15G02955 Glycine max GLYMA15G02955 I 0.719
SapurV1A.1869s0040 Salix purpurea SapurV1A.1869s0040 I 0.716
MTR_8g017440 Medicago truncatula MTR_8g017440 I 0.716
gene06920-v1.0-hybrid Fragaria vesca gene06920-v1.0-hybrid I 0.716
SapurV1A.0538s0150 Salix purpurea SapurV1A.0538s0150 I 0.716
MTR_8g017540 Medicago truncatula MTR_8g017540 I 0.716
Ciclev10027201m.g Citrus clementina Ciclev10027201m.g I 0.714
Pm010847 Prunus mume Pm010847 I 0.714
PRUPE_ppa026618mg Prunus persica PRUPE_ppa026618mg I 0.714
Ciclev10006752m.g Citrus clementina Ciclev10006752m.g I 0.712
orange1.1g036087m.g Citrus sinensis orange1.1g036087m.g I 0.712
Aquca_030_00294 Aquilegia coerulea Aquca_030_00294 I 0.710
Cla012793 Citrullus lanatus Cla012793 I 0.710
Cucsa.340960 Cucumis sativus Cucsa.340960 I 0.710
e_gw1.317.17.1 Physcomitrella patens e_gw1.317.17.1 I 0.709
Solyc02g082040.2 Solanum lycopersicum Solyc02g082040.2 I 0.706
MYB26 Arabidopsis lyrata fgenesh2_kg.3__1496__AT3G13890.1 I 0.699
Cagra.0736s0026 Capsella grandiflora Cagra.0736s0026 I 0.699
evm.TU.supercontig_25.69 Carica papaya evm.TU.supercontig_25.69 I 0.699
MYB26 Arabidopsis thaliana AT3G13890 I 0.699
Carubv10015767m.g Capsella rubella Carubv10015767m.g I 0.699
Bostr.28625s0318 Boechera stricta Bostr.28625s0318 I 0.699
MTR_2g099740 Medicago truncatula MTR_2g099740 I 0.699
MTR_8g017500 Medicago truncatula MTR_8g017500 I 0.696
MYB26 Vitis vinifera VIT_09s0002g01670 I 0.695
LPERR06G07150 Leersia perrieri LPERR06G07150 I 0.695
Solyc10g005240.2 Solanum lycopersicum Solyc10g005240.2 I 0.694
mgf026023m Mimulus guttatus mgf026023m I 0.693
PGSC0003DMG400037038 Solanum tuberosum PGSC0003DMG400037038 I 0.692
PRUPE_ppa022859mg Prunus persica PRUPE_ppa022859mg I 0.691
LPERR01G24370 Leersia perrieri LPERR01G24370 I 0.688
OPUNC01G28160 Oryza punctata OPUNC01G28160 I 0.688
BRADI2G47887 Brachypodium distachyon BRADI2G47887 I 0.688
BGIOSGA004306 Oryza indica BGIOSGA004306 I 0.688
OB01G37410 Oryza brachyantha OB01G37410 I 0.688
OS01G0709000 Oryza sativa OS01G0709000 I 0.688
ORGLA01G0234600 Oryza glaberrima ORGLA01G0234600 I 0.688
OLONG_008660 Oryza longistaminata OLONG_008660 I 0.688
VIT_05s0020g01100 Vitis vinifera VIT_05s0020g01100 I 0.687
OB06G17320 Oryza brachyantha OB06G17320 I 0.686
OMERI07G11910 Oryza meridionalis OMERI07G11910 I 0.685
LPERR07G12760 Leersia perrieri LPERR07G12760 I 0.685
GRMZM2G172327 Zea mays GRMZM2G172327 I 0.685
OPUNC07G13970 Oryza punctata OPUNC07G13970 I 0.685
ORGLA07G0124200 Oryza glaberrima ORGLA07G0124200 I 0.685
Pavir.Bb02786 Panicum virgatum Pavir.Bb02786 I 0.685
ORUFI07G15620 Oryza rufipogon ORUFI07G15620 I 0.685
Pavir.Ba00923 Panicum virgatum Pavir.Ba00923 I 0.685
OS07G0497500 Oryza sativa OS07G0497500 I 0.685
OBART07G15150 Oryza barthii OBART07G15150 I 0.685
Sb02g033830 Sorghum bicolor Sb02g033830 I 0.685
Si030152m.g Setaria italica Si030152m.g I 0.685
BGIOSGA024270 Oryza indica BGIOSGA024270 I 0.685
Si002319m.g Setaria italica Si002319m.g I 0.685
GSMUA_Achr6G35800_001 Musa acuminata GSMUA_Achr6G35800_001 I 0.683
GSMUA_Achr9G11190_001 Musa acuminata GSMUA_Achr9G11190_001 I 0.683
estExt_gwp_gw1.C_20043 Physcomitrella patens estExt_gwp_gw1.C_20043 I 0.682
GSMUA_AchrUn_randomG15560_001 Musa acuminata GSMUA_AchrUn_randomG15560_001 I 0.682
Pavir.Ea02594 Panicum virgatum Pavir.Ea02594 I 0.682
Sb03g032600 Sorghum bicolor Sb03g032600 I 0.682
F775_00835 Aegilops tauschii F775_00835 I 0.679
gene19715-v1.0-hybrid Fragaria vesca gene19715-v1.0-hybrid I 0.679
TRIUR3_26358 Triticum urartu TRIUR3_26358 I 0.679
GRMZM2G111045 Zea mays GRMZM2G111045 I 0.679
MLOC_56753 Hordeum vulgare MLOC_56753 I 0.679
Traes_2AS_40FA27AE7 Triticum aestivum Traes_2AS_40FA27AE7 I 0.679
ORGLA08G0162300 Oryza glaberrima ORGLA08G0162300 I 0.678
Pavir.Fb01820 Panicum virgatum Pavir.Fb01820 I 0.678
ORUFI08G20890 Oryza rufipogon ORUFI08G20890 I 0.678
OB08G25790 Oryza brachyantha OB08G25790 I 0.678
OGLUM08G19650 Oryza glumaepatula OGLUM08G19650 I 0.678
ONIVA08G20680 Oryza nivara ONIVA08G20680 I 0.678
OMERI08G14710 Oryza meridionalis OMERI08G14710 I 0.678
MTR_8g017350 Medicago truncatula MTR_8g017350 I 0.677
POPTR_0005s07590 Populus trichocarpa POPTR_0005s07590 I 0.676
Gorai.009G281000 Gossypium raimondii Gorai.009G281000 I 0.676
SapurV1A.0403s0220 Salix purpurea SapurV1A.0403s0220 I 0.676
SapurV1A.2488s0010 Salix purpurea SapurV1A.2488s0010 I 0.676
AMTR_s00038p00183620 Amborella trichopoda AMTR_s00038p00183620 I 0.676
TCM_034902 Theobroma cacao TCM_034902 I 0.676
TCM_001102 Theobroma cacao TCM_001102 I 0.676
e_gw1.326.5.1 Physcomitrella patens e_gw1.326.5.1 I 0.675
Cagra.10702s0006 Capsella grandiflora Cagra.10702s0006 I 0.675
e_gw1.106.133.1 Physcomitrella patens e_gw1.106.133.1 I 0.675
Carubv10020714m.g Capsella rubella Carubv10020714m.g I 0.675
OGLUM06G08200 Oryza glumaepatula OGLUM06G08200 I 0.674
ORUFI06G07920 Oryza rufipogon ORUFI06G07920 I 0.674
ONIVA06G08940 Oryza nivara ONIVA06G08940 I 0.674
MTR_8g017390 Medicago truncatula MTR_8g017390 I 0.674
ORGLA06G0073000 Oryza glaberrima ORGLA06G0073000 I 0.674
OS06G0221000 Oryza sativa OS06G0221000 I 0.674
OBART06G07710 Oryza barthii OBART06G07710 I 0.674
MDP0000302984 Malus domestica MDP0000302984 I 0.673
MDP0000320772 Malus domestica MDP0000320772 I 0.673
gene16287-v1.0-hybrid Fragaria vesca gene16287-v1.0-hybrid I 0.673
MDP0000228252 Malus domestica MDP0000228252 I 0.673
GSMUA_Achr5G18080_001 Musa acuminata GSMUA_Achr5G18080_001 I 0.673
GSMUA_Achr10G19130_001 Musa acuminata GSMUA_Achr10G19130_001 I 0.673
PRUPE_ppa019923mg Prunus persica PRUPE_ppa019923mg I 0.673
evm.TU.supercontig_752.1 Carica papaya evm.TU.supercontig_752.1 I 0.673
Pm002011 Prunus mume Pm002011 I 0.673
gene19934-v1.0-hybrid Fragaria vesca gene19934-v1.0-hybrid I 0.672
e_gw1.45.189.1 Physcomitrella patens e_gw1.45.189.1 I 0.672
BRADI1G61397 Brachypodium distachyon BRADI1G61397 I 0.672
OS08G0151300 Oryza sativa OS08G0151300 I 0.671
OGLUM08G03030 Oryza glumaepatula OGLUM08G03030 I 0.671
OBART08G03020 Oryza barthii OBART08G03020 I 0.671
OB08G13090 Oryza brachyantha OB08G13090 I 0.671
Pavir.J29561 Panicum virgatum Pavir.J29561 I 0.671
GRMZM2G325907 Zea mays GRMZM2G325907 I 0.671
LPERR08G03020 Leersia perrieri LPERR08G03020 I 0.671
ONIVA06G02400 Oryza nivara ONIVA06G02400 I 0.671
BGIOSGA027659 Oryza indica BGIOSGA027659 I 0.671
Pavir.Fb00364 Panicum virgatum Pavir.Fb00364 I 0.671
Sb07g003320 Sorghum bicolor Sb07g003320 I 0.671
ORGLA08G0023900 Oryza glaberrima ORGLA08G0023900 I 0.671
evm.TU.supercontig_18.232 Carica papaya evm.TU.supercontig_18.232 I 0.671
OMERI08G02950 Oryza meridionalis OMERI08G02950 I 0.671
ORUFI08G03380 Oryza rufipogon ORUFI08G03380 I 0.671
gw1.106.41.1 Physcomitrella patens gw1.106.41.1 I 0.670
MDP0000868578 Malus domestica MDP0000868578 I 0.669
BRADI1G45510 Brachypodium distachyon BRADI1G45510 I 0.669
gene31836-v1.0-hybrid Fragaria vesca gene31836-v1.0-hybrid I 0.669
AMTR_s00032p00221670 Amborella trichopoda AMTR_s00032p00221670 I 0.669
GSMUA_Achr2G02970_001 Musa acuminata GSMUA_Achr2G02970_001 I 0.669
GSMUA_Achr8G03510_001 Musa acuminata GSMUA_Achr8G03510_001 I 0.668
chr2.CM0124.80.nc Lotus japonicus chr2.CM0124.80.nc I 0.668
MTR_8g017340 Medicago truncatula MTR_8g017340 I 0.668
VIT_07s0141g00100 Vitis vinifera VIT_07s0141g00100 I 0.667
Traes_7BS_7E91DE546 Triticum aestivum Traes_7BS_7E91DE546 I 0.665
Traes_7DS_469ED3135 Triticum aestivum Traes_7DS_469ED3135 I 0.665
AtMYB93 Vitis vinifera VIT_18s0001g05670 I 0.665
F775_06136 Aegilops tauschii F775_06136 I 0.665
mgf012840m Mimulus guttatus mgf012840m I 0.665
Si008086m.g Setaria italica Si008086m.g I 0.664
AMTR_s00079p00143780 Amborella trichopoda AMTR_s00079p00143780 I 0.664
GSMUA_Achr10G24560_001 Musa acuminata GSMUA_Achr10G24560_001 I 0.663
Sb04g033670 Sorghum bicolor Sb04g033670 I 0.662
Eucgr.H01337 Eucalyptus grandis Eucgr.H01337 I 0.662
GRMZM2G040924 Zea mays GRMZM2G040924 I 0.662
PGSC0003DMG400007325 Solanum tuberosum PGSC0003DMG400007325 I 0.661
Aquca_013_00356 Aquilegia coerulea Aquca_013_00356 I 0.661
PGSC0003DMG400021654 Solanum tuberosum PGSC0003DMG400021654 I 0.661
Pavir.J21520 Panicum virgatum Pavir.J21520 I 0.661
Solyc05g048830.2 Solanum lycopersicum Solyc05g048830.2 I 0.661