CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
POPTR_0010s20990
(
Populus trichocarpa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
POPTR_0010s20990
T278403_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TRP1
M07148_2.00
Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT
Dap-seq
OMalley et al.(2016)
TRP1_col
0.839
0.915
TRP5
M01266_2.00
Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN
PBM
Lambert et al.(2019)
pTH9963
0.821
0.894
PK21687.1
M01282_2.00
Cannabis sativa
HWAAACCYH
DRGGTTTWD
PBM
Lambert et al.(2019)
pTH11299
0.821
0.894
TRP2
M07092_2.00
Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT
Dap-seq
OMalley et al.(2016)
TRP2_col_a
0.813
0.872
TRP2
M07093_2.00
Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT
Dap-seq
OMalley et al.(2016)
TRP2_colamp_a
0.813
0.872
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0010s20990.1
Myb
593
643
RRPFSVSEVEALVHAVEELGTGRWRDVKLCSFEDADHRTYVDLKDKWKTLV
POPTR_0010s20990.2
Myb
575
625
RRPFSVSEVEALVHAVEELGTGRWRDVKLCSFEDADHRTYVDLKDKWKTLV
POPTR_0010s20990.4
Myb
582
632
RRPFSVSEVEALVHAVEELGTGRWRDVKLCSFEDADHRTYVDLKDKWKTLV
POPTR_0010s20990.5
Myb
591
641
RRPFSVSEVEALVHAVEELGTGRWRDVKLCSFEDADHRTYVDLKDKWKTLV
Links
Other
Myb/SANT
family TFs
Other
Populus trichocarpa
TFs
198 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy