CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0011s04010
(
Populus trichocarpa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
POPTR_0011s04010
T278409_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0011s04010.1
Myb
40
87
RGTWDPDEDQKLRAYIKRHSIWNWNEMPRAAGLLRSGKSCRLRWMNYL
POPTR_0011s04010.1
Myb
93
138
RGSFSKEEVQTIIKLQEMLGNRWSTIAAKLPGRTDNDIKNFWNTHV
Links
Other
Myb/SANT
family TFs
Other
Populus trichocarpa
TFs
44 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
POPTR_0011s04020
Populus trichocarpa
POPTR_0011s04020
N
0.798
TCM_033016
Theobroma cacao
TCM_033016
N
0.787
TCM_033015
Theobroma cacao
TCM_033015
N
0.777
29933.m001454
Ricinus communis
29933.m001454
N
0.767
POPTR_0011s04000
Populus trichocarpa
POPTR_0011s04000
N
0.761
cassava5261.m1
Manihot esculenta
cassava5261.m1
N
0.758
cassava5263.m1
Manihot esculenta
cassava5263.m1
N
0.758
evm.TU.supercontig_27.156
Carica papaya
evm.TU.supercontig_27.156
N
0.752
Gorai.013G143000
Gossypium raimondii
Gorai.013G143000
N
0.735
Gorai.013G143200
Gossypium raimondii
Gorai.013G143200
I
0.728
POPTR_0004s02570
Populus trichocarpa
POPTR_0004s02570
I
0.723
Gorai.013G143100
Gossypium raimondii
Gorai.013G143100
N
0.722
MDP0000289283
Malus domestica
MDP0000289283
I
0.717
MDP0000131822
Malus domestica
MDP0000131822
I
0.713
Eucgr.D00040
Eucalyptus grandis
Eucgr.D00040
I
0.704
Pm009880
Prunus mume
Pm009880
N
0.704
Eucgr.D00042
Eucalyptus grandis
Eucgr.D00042
I
0.704
Eucgr.D00050
Eucalyptus grandis
Eucgr.D00050
N
0.703
Ciclev10017679m.g
Citrus clementina
Ciclev10017679m.g
I
0.702
VIT_00s0203g00170
Vitis vinifera
VIT_00s0203g00170
N
0.701
gene30736-v1.0-hybrid
Fragaria vesca
gene30736-v1.0-hybrid
N
0.699
orange1.1g037956m.g
Citrus sinensis
orange1.1g037956m.g
N
0.695
SapurV1A.0028s0640
Salix purpurea
SapurV1A.0028s0640
N
0.695
PRUPE_ppa015081mg
Prunus persica
PRUPE_ppa015081mg
N
0.694
VIT_12s0134g00480
Vitis vinifera
VIT_12s0134g00480
I
0.694
Gorai.011G021300
Gossypium raimondii
Gorai.011G021300
N
0.693
TCM_030020
Theobroma cacao
TCM_030020
I
0.690
Gorai.005G206800
Gossypium raimondii
Gorai.005G206800
N
0.688
TCM_007865
Theobroma cacao
TCM_007865
I
0.683
MDP0000155426
Malus domestica
MDP0000155426
I
0.683
Eucgr.D00037
Eucalyptus grandis
Eucgr.D00037
N
0.679
GLYMA06G45554
Glycine max
GLYMA06G45554
I
0.678
Eucgr.H00158
Eucalyptus grandis
Eucgr.H00158
I
0.677
Gorai.010G148300
Gossypium raimondii
Gorai.010G148300
N
0.676
Eucgr.A01766
Eucalyptus grandis
Eucgr.A01766
I
0.675
Gorai.012G132400
Gossypium raimondii
Gorai.012G132400
I
0.675
PRUPE_ppa026553mg
Prunus persica
PRUPE_ppa026553mg
N
0.670
Pm015302
Prunus mume
Pm015302
N
0.670
Gorai.002G016800
Gossypium raimondii
Gorai.002G016800
I
0.666
Bostr.24513s0107
Boechera stricta
Bostr.24513s0107
I
0.665
GSMUA_Achr5G03920_001
Musa acuminata
GSMUA_Achr5G03920_001
I
0.664
MDP0000407613
Malus domestica
MDP0000407613
N
0.663
VIT_12s0134g00490
Vitis vinifera
VIT_12s0134g00490
I
0.661
Eucgr.H03057
Eucalyptus grandis
Eucgr.H03057
I
0.661