CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0012s05720
(
Populus trichocarpa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
POPTR_0012s05720
T278420_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT1G49010
M01269_2.00
Arabidopsis thaliana
NNYWATCNN
NNGATWRNN
PBM
Lambert et al.(2019)
pTH11535
0.736
0.824
AT1G49010
M07022_2.00
Arabidopsis thaliana
NHHWWYCTTATCYWH
DWRGATAAGRWWDDN
Dap-seq
OMalley et al.(2016)
At1g49010_col_a
0.736
0.824
AT1G49010
M07023_2.00
Arabidopsis thaliana
WWYCTTATCYWHWHH
DDWDWRGATAAGRWW
Dap-seq
OMalley et al.(2016)
At1g49010_colamp_a
0.736
0.824
PK19621.1
M01280_2.00
Cannabis sativa
NNTTATCYN
NRGATAANN
PBM
Lambert et al.(2019)
pTH10140
0.693
0.824
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0012s05720.1
Myb
131
176
PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYF
Links
Other
Myb/SANT
family TFs
Other
Populus trichocarpa
TFs
28 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0583s0020
Salix purpurea
SapurV1A.0583s0020
I
0.857
Gorai.006G063000
Gossypium raimondii
Gorai.006G063000
I
0.802
Ciclev10021342m.g
Citrus clementina
Ciclev10021342m.g
I
0.791
TCM_012262
Theobroma cacao
TCM_012262
I
0.774
PRUPE_ppa009092mg
Prunus persica
PRUPE_ppa009092mg
I
0.759
Pm030197
Prunus mume
Pm030197
I
0.759
Ca_06612
Cicer arietinum
Ca_06612
I
0.754
GLYMA05G07980
Glycine max
GLYMA05G07980
I
0.746
30174.m008717
Ricinus communis
30174.m008717
I
0.745
Thhalv10011650m.g
Eutrema salsugineum
Thhalv10011650m.g
I
0.743
AT1G49010
Arabidopsis thaliana
AT1G49010
D
0.736
scaffold_104540.1
Arabidopsis lyrata
scaffold_104540.1
I
0.732
GLYMA17G13010
Glycine max
GLYMA17G13010
I
0.726
Bostr.26675s0270
Boechera stricta
Bostr.26675s0270
I
0.725
MTR_4g111975
Medicago truncatula
MTR_4g111975
I
0.720
MDP0000853568
Malus domestica
MDP0000853568
I
0.715
Eucgr.K02659
Eucalyptus grandis
Eucgr.K02659
I
0.711
chr4.LjB15O07.50.nc
Lotus japonicus
chr4.LjB15O07.50.nc
I
0.703
Bo6g018000
Brassica oleracea
Bo6g018000
I
0.701
Bra018772
Brassica rapa
Bra018772
I
0.701
Bra014169
Brassica rapa
Bra014169
I
0.701
Cagra.1613s0002
Capsella grandiflora
Cagra.1613s0002
I
0.697
Carubv10009808m.g
Capsella rubella
Carubv10009808m.g
I
0.697
PK19621.1
Cannabis sativa
PK19621.1
D
0.693
MDP0000241185
Malus domestica
MDP0000241185
N
0.691
Bo00685s060
Brassica oleracea
Bo00685s060
I
0.689
gene26214-v1.0-hybrid
Fragaria vesca
gene26214-v1.0-hybrid
I
0.683
Solyc03g119740.2
Solanum lycopersicum
Solyc03g119740.2
I
0.680