CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0012s08190
(
Populus trichocarpa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
POPTR_0012s08190
T278423_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
WER
M11047_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WEREWOLF_Q2_01
0.750
0.849
WER
M11048_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WEREWOLF_Q2
0.750
0.849
MYB23
M07133_2.00
Arabidopsis thaliana
HCAACWAHHHH
DDDDTWGTTGD
Dap-seq
OMalley et al.(2016)
MYB23_col_a
0.689
0.817
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0012s08190.1
Myb
11
58
KGLWTEEEDRILTDHVKVHGKGKWNQIAKVTGLKRCGKSCRLRWMNYL
POPTR_0012s08190.1
Myb
64
109
RGVFSEEEDDLIIRLHKLLGNRWSLIAGRVPGRTDNQVKNHWNTHL
Links
Other
Myb/SANT
family TFs
Other
Populus trichocarpa
TFs
70 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.1404s0020
Salix purpurea
SapurV1A.1404s0020
I
0.856
Pm024725
Prunus mume
Pm024725
I
0.846
cassava26193.m1
Manihot esculenta
cassava26193.m1
I
0.835
TCM_012057
Theobroma cacao
TCM_012057
I
0.827
MDP0000650225
Malus domestica
MDP0000650225
I
0.825
VIT_17s0000g08480
Vitis vinifera
VIT_17s0000g08480
I
0.824
SapurV1A.1178s0050
Salix purpurea
SapurV1A.1178s0050
I
0.815
Eucgr.B00373
Eucalyptus grandis
Eucgr.B00373
I
0.809
MDP0000578193
Malus domestica
MDP0000578193
I
0.806
Eucgr.J02212
Eucalyptus grandis
Eucgr.J02212
I
0.805
PRUPE_ppa010908mg
Prunus persica
PRUPE_ppa010908mg
I
0.800
POPTR_0015s08680
Populus trichocarpa
POPTR_0015s08680
I
0.793
evm.TU.supercontig_124.57
Carica papaya
evm.TU.supercontig_124.57
I
0.788
Gorai.007G001800
Gossypium raimondii
Gorai.007G001800
I
0.779
Aquca_025_00333
Aquilegia coerulea
Aquca_025_00333
I
0.771
gene32181-v1.0-hybrid
Fragaria vesca
gene32181-v1.0-hybrid
I
0.769
Bostr.2902s0211
Boechera stricta
Bostr.2902s0211
I
0.750
WER
Arabidopsis lyrata
fgenesh2_kg.6__1454__AT5G14750.1
I
0.750
Thhalv10014715m.g
Eutrema salsugineum
Thhalv10014715m.g
I
0.750
Bo2g012170
Brassica oleracea
Bo2g012170
I
0.750
Cagra.3166s0078
Capsella grandiflora
Cagra.3166s0078
I
0.750
WER
Arabidopsis thaliana
AT5G14750
D
0.750
Carubv10001990m.g
Capsella rubella
Carubv10001990m.g
I
0.750
TCM_016886
Theobroma cacao
TCM_016886
I
0.745
Aquca_002_00170
Aquilegia coerulea
Aquca_002_00170
I
0.742
MDP0000266683
Malus domestica
MDP0000266683
I
0.739
Bra008740
Brassica rapa
Bra008740
I
0.733
Bo9g165670
Brassica oleracea
Bo9g165670
I
0.733
Gorai.012G061800
Gossypium raimondii
Gorai.012G061800
I
0.727
Bostr.1460s0063
Boechera stricta
Bostr.1460s0063
I
0.727
Eucgr.B03324
Eucalyptus grandis
Eucgr.B03324
N
0.727
SapurV1A.1178s0040
Salix purpurea
SapurV1A.1178s0040
N
0.725
Thhalv10005428m.g
Eutrema salsugineum
Thhalv10005428m.g
I
0.721
POPTR_0015s08700
Populus trichocarpa
POPTR_0015s08700
I
0.721
Bra025311
Brassica rapa
Bra025311
I
0.721
cassava27350.m1
Manihot esculenta
cassava27350.m1
I
0.721
VIT_14s0066g01220
Vitis vinifera
VIT_14s0066g01220
I
0.720
Ciclev10032713m.g
Citrus clementina
Ciclev10032713m.g
I
0.713
orange1.1g047269m.g
Citrus sinensis
orange1.1g047269m.g
I
0.713
MDP0000537324
Malus domestica
MDP0000537324
I
0.711
VIT_01s0127g00730
Vitis vinifera
VIT_01s0127g00730
I
0.710
Bo7g090950
Brassica oleracea
Bo7g090950
I
0.709
LjT16O05.150.nd
Lotus japonicus
LjT16O05.150.nd
I
0.709
Bra023486
Brassica rapa
Bra023486
I
0.709
TCM_010360
Theobroma cacao
TCM_010360
I
0.706
MDP0000164048
Malus domestica
MDP0000164048
I
0.703
PRUPE_ppa014884mg
Prunus persica
PRUPE_ppa014884mg
I
0.703
Pm006678
Prunus mume
Pm006678
I
0.703
Ciclev10017556m.g
Citrus clementina
Ciclev10017556m.g
I
0.703
TCM_037377
Theobroma cacao
TCM_037377
I
0.696
MYB23
Arabidopsis thaliana
AT5G40330
D
0.689
Bra025589
Brassica rapa
Bra025589
I
0.689
Thhalv10028340m.g
Eutrema salsugineum
Thhalv10028340m.g
I
0.689
Bostr.7200s0005
Boechera stricta
Bostr.7200s0005
I
0.689
Cagra.3160s0003
Capsella grandiflora
Cagra.3160s0003
I
0.689
Carubv10005698m.g
Capsella rubella
Carubv10005698m.g
I
0.689
GL1
Arabidopsis thaliana
AT3G27920
I
0.686
GL1
Arabidopsis lyrata
fgenesh1_pg.C_scaffold_5000559
I
0.686
Carubv10018791m.g
Capsella rubella
Carubv10018791m.g
I
0.686
Cagra.4961s0006
Capsella grandiflora
Cagra.4961s0006
I
0.686
Eucgr.I01791
Eucalyptus grandis
Eucgr.I01791
I
0.679
GLYMA20G32500
Glycine max
GLYMA20G32500
I
0.678
Gorai.001G020600
Gossypium raimondii
Gorai.001G020600
I
0.672
GLYMA10G35061
Glycine max
GLYMA10G35061
I
0.670
evm.TU.supercontig_126.33
Carica papaya
evm.TU.supercontig_126.33
I
0.669
Solyc12g049300.1
Solanum lycopersicum
Solyc12g049300.1
I
0.668
MDP0000199965
Malus domestica
MDP0000199965
I
0.668
VIT_11s0016g01320
Vitis vinifera
VIT_11s0016g01320
I
0.665
Bra039065
Brassica rapa
Bra039065
I
0.664
Bostr.0556s0467
Boechera stricta
Bostr.0556s0467
I
0.661