POPTR_0014s00280 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0014s00280 T278445_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PHL6
M02295_2.00
Arabidopsis thaliana
NNWKATNCBN

NVGNATMWNN
PBM
Weirauch et al.(2014)
pTH7071
0.794 0.809
PHL6
M07083_2.00
Arabidopsis thaliana
NDGAAAACH

DGTTTTCHN
Dap-seq
OMalley et al.(2016)
At3g13040_col_b
0.794 0.809
PHR1
M02329_2.00
Oryza sativa
NWKATNCBNN

NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7755
0.765 0.851
PHL11
M07134_2.00
Arabidopsis thaliana
NNRAAKATTCYHHN

NDDRGAATMTTYNN
Dap-seq
OMalley et al.(2016)
AT5G45580_col_a
0.744 0.766
PHL11
M07135_2.00
Arabidopsis thaliana
NRAAKATTCYHHNN

NNDDRGAATMTTYN
Dap-seq
OMalley et al.(2016)
AT5G45580_colamp_a
0.744 0.766
PHL1
M02310_2.00
Arabidopsis thaliana
NWKATNCBNN

NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7122
0.735 0.809
PHL1
M07132_2.00
Arabidopsis thaliana
MDRGAATATTCBNWN

NWNVGAATATTCYHK
Dap-seq
OMalley et al.(2016)
At5g29000_col_a
0.735 0.809
PHL7
M02292_2.00
Arabidopsis thaliana
NWGATDCBNN

NNVGHATCWN
PBM
Weirauch et al.(2014)
pTH7253
0.728 0.787
PK10342.1
M02351_2.00
Cannabis sativa
WAGATKCS

SGMATCTW
PBM
Weirauch et al.(2014)
pTH9489
0.728 0.787
PHL7
M07040_2.00
Arabidopsis thaliana
DRNAKATTCBNHNNN

NNNDNVGAATMTNYH
Dap-seq
OMalley et al.(2016)
At2g01060_colamp_a
0.728 0.787
PHL7
M07041_2.00
Arabidopsis thaliana
VGAATATTCBNHH

DDNVGAATATTCB
Dap-seq
OMalley et al.(2016)
At2g01060_col
0.728 0.787
PHR1
M02302_2.00
Arabidopsis thaliana
NWKATNCBNN

NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7249
0.687 0.809
PHL12
M01077_2.00
Arabidopsis thaliana
NWKATTCBNN

NNVGAATMWN
PBM
Sullivan et al.(2014)
pTH7098
0.678 0.681
AT3G24120
M00729_2.00
Arabidopsis thaliana
NNKATDCBNN

NNVGHATMNN
PBM
Chang et al.(2013)
pTH7086
0.678 0.681
PHL12
M07079_2.00
Arabidopsis thaliana
RGAATATTCYYTWN

NWARRGAATATTCY
Dap-seq
OMalley et al.(2016)
At3g12730_col_a
0.678 0.681
PHL12
M07080_2.00
Arabidopsis thaliana
NNRAAKATTCBHHN

NDDVGAATMTTYNN
Dap-seq
OMalley et al.(2016)
At3g12730_colamp_a
0.678 0.681
AT3G24120
M07085_2.00
Arabidopsis thaliana
HAKATTCB

VGAATMTD
Dap-seq
OMalley et al.(2016)
At3g24120_col_a
0.678 0.681
AT3G24120
M07086_2.00
Arabidopsis thaliana
NDRAAKATTCBHHN

NDDVGAATMTTYHN
Dap-seq
OMalley et al.(2016)
At3g24120_colamp_a
0.678 0.681
AT2G38300
M07056_2.00
Arabidopsis thaliana
WAHATTCYHTH

DADRGAATDTW
Dap-seq
OMalley et al.(2016)
AT2G38300_col_a
0.670 0.638
Q5IWM2_WHEAT
M11059_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB80_01
0.663 0.702
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0014s00280.1 Myb 273 324

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

Invalid Input OrderBy

683 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action