POPTR_0015s08880 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0015s08880 T278477_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB98
M02301_2.00
Arabidopsis thaliana
NNGTAACGKMN

NKMCGTTACNN
PBM
Weirauch et al.(2014)
pTH8148
0.713 0.817
MYB98
M07108_2.00
Arabidopsis thaliana
DWWWHGTAACGKWHD

HDWMCGTTACDWWWH
Dap-seq
OMalley et al.(2016)
MYB98_col_a
0.713 0.817
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0015s08880.1 Myb 189 235
POPTR_0015s08880.1 Myb 241 286

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

130 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_22212 Aegilops tauschii F775_22212 I 0.748
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I 0.746
MYB98 Arabidopsis lyrata scaffold_702543.1 I 0.713
fgenesh2_kg.277__1__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.277__1__AT5G58850.1 I 0.669
fgenesh2_kg.3__2684__AT5G58850.1 Arabidopsis lyrata fgenesh2_kg.3__2684__AT5G58850.1 I 0.669
MYB98 Arabidopsis thaliana AT4G18770 D 0.713
Bostr.30275s0352 Boechera stricta Bostr.30275s0352 I 0.737
Bo7g106240 Brassica oleracea Bo7g106240 I 0.712
Bo3g157300 Brassica oleracea Bo3g157300 I 0.734
Bo3g018490 Brassica oleracea Bo3g018490 I 0.698
Bo2g028290 Brassica oleracea Bo2g028290 I 0.685
Bo1g019910 Brassica oleracea Bo1g019910 I 0.737
Bra020992 Brassica rapa Bra020992 I 0.725
Bra020346 Brassica rapa Bra020346 I 0.681
Bra013346 Brassica rapa Bra013346 I 0.737
Bra012579 Brassica rapa Bra012579 I 0.699
Bra006744 Brassica rapa Bra006744 I 0.698
Cagra.4306s0015 Capsella grandiflora Cagra.4306s0015 I 0.737
Carubv10006734m.g Capsella rubella Carubv10006734m.g I 0.737
evm.TU.supercontig_112.44 Carica papaya evm.TU.supercontig_112.44 N 0.723
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I 0.759
Ca_17087 Cicer arietinum Ca_17087 I 0.679
Ca_17294 Cicer arietinum Ca_17294 I 0.733
Ca_07482 Cicer arietinum Ca_07482 I 0.673
Cla019490 Citrullus lanatus Cla019490 I 0.815
Cla008304 Citrullus lanatus Cla008304 N 0.673
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I 0.760
Ciclev10030254m.g Citrus clementina Ciclev10030254m.g N 0.704
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I 0.760
orange1.1g046581m.g Citrus sinensis orange1.1g046581m.g N 0.704
Cucsa.196850 Cucumis sativus Cucsa.196850 I 0.814
Cucsa.146980 Cucumis sativus Cucsa.146980 N 0.670
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I 0.775
Thhalv10016057m.g Eutrema salsugineum Thhalv10016057m.g I 0.661
Thhalv10026824m.g Eutrema salsugineum Thhalv10026824m.g I 0.743
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I 0.689
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I 0.787
GLYMA05G02300 Glycine max GLYMA05G02300 I 0.793
GLYMA18G07360 Glycine max GLYMA18G07360 N 0.670
GLYMA06G19280 Glycine max GLYMA06G19280 I 0.760
Gorai.001G115300 Gossypium raimondii Gorai.001G115300 N 0.697
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I 0.827
Gorai.011G044100 Gossypium raimondii Gorai.011G044100 N 0.697
LPERR06G03780 Leersia perrieri LPERR06G03780 I 0.757
LPERR12G04190 Leersia perrieri LPERR12G04190 I 0.687
Lus10042111.g Linum usitatissimum Lus10042111.g I 0.750
Lus10002384.g Linum usitatissimum Lus10002384.g I 0.729
Lus10039966.g Linum usitatissimum Lus10039966.g I 0.733
Lus10027695.g Linum usitatissimum Lus10027695.g I 0.782
chr4.CM0042.120.nd Lotus japonicus chr4.CM0042.120.nd N 0.679
MDP0000215359 Malus domestica MDP0000215359 I 0.820
MDP0000319656 Malus domestica MDP0000319656 I 0.721
cassava19706.m1 Manihot esculenta cassava19706.m1 I 0.784
cassava26507.m1 Manihot esculenta cassava26507.m1 N 0.723
cassava26674.m1 Manihot esculenta cassava26674.m1 N 0.694
cassava33974.m1 Manihot esculenta cassava33974.m1 I 0.760
cassava9008.m1 Manihot esculenta cassava9008.m1 I 0.725
MTR_3g077650 Medicago truncatula MTR_3g077650 I 0.687
MTR_3g463400 Medicago truncatula MTR_3g463400 N 0.673
MTR_4g105660 Medicago truncatula MTR_4g105660 N 0.685
MTR_5g049190 Medicago truncatula MTR_5g049190 I 0.700
mg025334m Mimulus guttatus mg025334m I 0.682
mgf023372m Mimulus guttatus mgf023372m I 0.673
mgf024290m Mimulus guttatus mgf024290m I 0.681
GSMUA_Achr6G06490_001 Musa acuminata GSMUA_Achr6G06490_001 I 0.694
GSMUA_Achr8G02290_001 Musa acuminata GSMUA_Achr8G02290_001 N 0.671
GSMUA_Achr6G33700_001 Musa acuminata GSMUA_Achr6G33700_001 N 0.711
GSMUA_Achr3G19490_001 Musa acuminata GSMUA_Achr3G19490_001 I 0.687
GSMUA_Achr10G00770_001 Musa acuminata GSMUA_Achr10G00770_001 N 0.702
OBART12G04480 Oryza barthii OBART12G04480 I 0.712
OBART12G04500 Oryza barthii OBART12G04500 I 0.712
OBART06G04170 Oryza barthii OBART06G04170 I 0.739
OB06G13860 Oryza brachyantha OB06G13860 I 0.748
OB12G14410 Oryza brachyantha OB12G14410 I 0.692
ORGLA12G0042300 Oryza glaberrima ORGLA12G0042300 I 0.712
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I 0.739
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I 0.739
OGLUM12G05330 Oryza glumaepatula OGLUM12G05330 I 0.712
BGIOSGA022369 Oryza indica BGIOSGA022369 I 0.739
BGIOSGA036541 Oryza indica BGIOSGA036541 I 0.712
OLONG_008158 Oryza longistaminata OLONG_008158 I 0.712
OLONG_010000 Oryza longistaminata OLONG_010000 I 0.739
OMERI06G04840 Oryza meridionalis OMERI06G04840 I 0.739
OMERI12G02760 Oryza meridionalis OMERI12G02760 I 0.712
ONIVA12G04220 Oryza nivara ONIVA12G04220 I 0.712
ONIVA06G05390 Oryza nivara ONIVA06G05390 I 0.739
OPUNC06G03990 Oryza punctata OPUNC06G03990 I 0.739
OPUNC12G04510 Oryza punctata OPUNC12G04510 I 0.712
ORUFI06G04170 Oryza rufipogon ORUFI06G04170 I 0.739
ORUFI12G05180 Oryza rufipogon ORUFI12G05180 I 0.712
OS06G0162700 Oryza sativa OS06G0162700 I 0.739
Pavir.J02718 Panicum virgatum Pavir.J02718 I 0.754
Pavir.J37434 Panicum virgatum Pavir.J37434 I 0.734
Pavir.J25000 Panicum virgatum Pavir.J25000 I 0.747
Pavir.J02497 Panicum virgatum Pavir.J02497 I 0.754
PDK_20s1782461g001 Phoenix dactylifera PDK_20s1782461g001 N 0.698
POPTR_0012s08360 Populus trichocarpa POPTR_0012s08360 I 0.775
POPTR_0001s25710 Populus trichocarpa POPTR_0001s25710 N 0.690
POPTR_0005s12050 Populus trichocarpa POPTR_0005s12050 I 0.705
MYB118 Populus trichocarpa POPTR_0001s35140 I 0.664
POPTR_0009s04870 Populus trichocarpa POPTR_0009s04870 N 0.689
Pm024743 Prunus mume Pm024743 I 0.802
Pm000541 Prunus mume Pm000541 I 0.724
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I 0.802
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I 0.724
29681.m001315 Ricinus communis 29681.m001315 N 0.694
29917.m001977 Ricinus communis 29917.m001977 I 0.671
30147.m013937 Ricinus communis 30147.m013937 I 0.764
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I 0.710
SapurV1A.0772s0150 Salix purpurea SapurV1A.0772s0150 N 0.670
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I 0.852
Si039046m.g Setaria italica Si039046m.g I 0.754
Solyc03g112890.1 Solanum lycopersicum Solyc03g112890.1 I 0.679
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I 0.728
Solyc06g076840.1 Solanum lycopersicum Solyc06g076840.1 N 0.667
PGSC0003DMG400018092 Solanum tuberosum PGSC0003DMG400018092 I 0.679
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I 0.684
PGSC0003DMG400044141 Solanum tuberosum PGSC0003DMG400044141 N 0.667
Sb01g005100 Sorghum bicolor Sb01g005100 I 0.745
TCM_041651 Theobroma cacao TCM_041651 N 0.719
TCM_012087 Theobroma cacao TCM_012087 I 0.827
Traes_1DL_918A8F357 Triticum aestivum Traes_1DL_918A8F357 I 0.735
Traes_1BL_4D9406708 Triticum aestivum Traes_1BL_4D9406708 I 0.736
Traes_7BS_D28CCE3B8 Triticum aestivum Traes_7BS_D28CCE3B8 I 0.748
Traes_7AS_A337F362A Triticum aestivum Traes_7AS_A337F362A I 0.748
Traes_7DS_E27ECBC6E Triticum aestivum Traes_7DS_E27ECBC6E I 0.719
TRIUR3_12421 Triticum urartu TRIUR3_12421 I 0.748
MYB98 Vitis vinifera VIT_17s0000g08550 I 0.767
GRMZM2G302549 Zea mays GRMZM2G302549 I 0.724
GRMZM5G870592 Zea mays GRMZM5G870592 I 0.739