CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0015s14600
(
Populus trichocarpa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
POPTR_0015s14600
T278483_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK21166.1
M01281_2.00
Cannabis sativa
HACCWAMY
RKTWGGTD
PBM
Lambert et al.(2019)
pTH11255
0.794
0.871
MYB99
M07151_2.00
Arabidopsis thaliana
NYYYACCWAMYHH
DDRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB99_col_a
0.736
0.796
MYB99
M07152_2.00
Arabidopsis thaliana
YHYACCTAMYH
DRKTAGGTRDR
Dap-seq
OMalley et al.(2016)
MYB99_colamp_a
0.736
0.796
MYB43
M07127_2.00
Arabidopsis thaliana
NYYYACCWAMYWH
DWRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB43_col_a
0.699
0.796
MYB46
M00877_2.00
Arabidopsis thaliana
NAMCNDHHN
NDDHNGKTN
PBM
Franco-Zorrilla et al.(2014)
MYB46
0.672
0.667
MYB46
M11046_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATMYB46_Q6
0.672
0.667
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0015s14600.1
Myb
14
61
KGPWTAEEDKKLVSFILSHGQCCWRAVPKLAGLRRCGKSCRLRWTNYL
POPTR_0015s14600.1
Myb
67
112
RGLLNDDEEKLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHI
Links
Other
Myb/SANT
family TFs
Other
Populus trichocarpa
TFs
286 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy