CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0018s12780
(
Populus trichocarpa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
POPTR_0018s12780
T278528_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0018s12780.1
Myb
12
59
KGLWKPEEDLILKTYVETHGEGNWSTVSKKSGLMRGGKSCRLRWKNYL
POPTR_0018s12780.1
Myb
65
110
RGGMSQEEEDMIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHL
Links
Other
Myb/SANT
family TFs
Other
Populus trichocarpa
TFs
57 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0034s0330
Salix purpurea
SapurV1A.0034s0330
N
0.884
POPTR_0006s06530
Populus trichocarpa
POPTR_0006s06530
N
0.879
cassava32672.m1
Manihot esculenta
cassava32672.m1
I
0.858
PK01088.1
Cannabis sativa
PK01088.1
I
0.858
Pm027586
Prunus mume
Pm027586
I
0.848
SapurV1A.2191s0020
Salix purpurea
SapurV1A.2191s0020
N
0.846
SapurV1A.0197s0090
Salix purpurea
SapurV1A.0197s0090
N
0.846
evm.TU.supercontig_46.32
Carica papaya
evm.TU.supercontig_46.32
I
0.846
MDP0000264051
Malus domestica
MDP0000264051
I
0.845
Cla016951
Citrullus lanatus
Cla016951
I
0.845
Gorai.001G044000
Gossypium raimondii
Gorai.001G044000
I
0.841
PRUPE_ppa016532mg
Prunus persica
PRUPE_ppa016532mg
I
0.837
Eucgr.C01374
Eucalyptus grandis
Eucgr.C01374
I
0.833
MDP0000167314
Malus domestica
MDP0000167314
I
0.832
TCM_038131
Theobroma cacao
TCM_038131
I
0.830
gene31098-v1.0-hybrid
Fragaria vesca
gene31098-v1.0-hybrid
I
0.829
Cucsa.132300
Cucumis sativus
Cucsa.132300
N
0.821
Bo2g047590
Brassica oleracea
Bo2g047590
I
0.819
Thhalv10014754m.g
Eutrema salsugineum
Thhalv10014754m.g
I
0.811
Bra022602
Brassica rapa
Bra022602
I
0.808
Carubv10028642m.g
Capsella rubella
Carubv10028642m.g
I
0.807
Cagra.0084s0008
Capsella grandiflora
Cagra.0084s0008
I
0.807
MYB82
Arabidopsis thaliana
AT5G52600
I
0.807
Bostr.7305s0011
Boechera stricta
Bostr.7305s0011
I
0.802
Gorai.004G276500
Gossypium raimondii
Gorai.004G276500
N
0.798
mgf023205m
Mimulus guttatus
mgf023205m
I
0.786
AtMYB82
Arabidopsis lyrata
Al_scaffold_0008_1642
I
0.785
Solyc07g008010.2
Solanum lycopersicum
Solyc07g008010.2
I
0.769
PGSC0003DMG400030913
Solanum tuberosum
PGSC0003DMG400030913
I
0.769
Bra029113
Brassica rapa
Bra029113
I
0.768
Bo3g023140
Brassica oleracea
Bo3g023140
I
0.768
VIT_11s0016g05660
Vitis vinifera
VIT_11s0016g05660
N
0.724
VIT_11s0016g05690
Vitis vinifera
VIT_11s0016g05690
N
0.720
cassava29820.valid.m1
Manihot esculenta
cassava29820.valid.m1
I
0.703
GLYMA10G35050
Glycine max
GLYMA10G35050
I
0.693
GSMUA_Achr3G07940_001
Musa acuminata
GSMUA_Achr3G07940_001
I
0.676
AMTR_s00024p00224850
Amborella trichopoda
AMTR_s00024p00224850
I
0.675
Eucgr.B00866
Eucalyptus grandis
Eucgr.B00866
I
0.675
GLYMA19G44660
Glycine max
GLYMA19G44660
I
0.674
PRUPE_ppa019380mg
Prunus persica
PRUPE_ppa019380mg
I
0.674
Gorai.004G150800
Gossypium raimondii
Gorai.004G150800
I
0.672
GLYMA20G32510
Glycine max
GLYMA20G32510
I
0.672
gene15390-v1.0-hybrid
Fragaria vesca
gene15390-v1.0-hybrid
I
0.671
AMTR_s00024p00224470
Amborella trichopoda
AMTR_s00024p00224470
I
0.671
Pm029489
Prunus mume
Pm029489
I
0.670
PDK_20s1310471g002
Phoenix dactylifera
PDK_20s1310471g002
I
0.669
TCM_037379
Theobroma cacao
TCM_037379
I
0.668
AMTR_s00024p00224180
Amborella trichopoda
AMTR_s00024p00224180
I
0.668
GSMUA_Achr3G07950_001
Musa acuminata
GSMUA_Achr3G07950_001
I
0.668
GLYMA07G05960
Glycine max
GLYMA07G05960
I
0.666
GLYMA16G02570
Glycine max
GLYMA16G02570
I
0.666
SapurV1A.0710s0050
Salix purpurea
SapurV1A.0710s0050
I
0.665
PDK_20s1918041g001
Phoenix dactylifera
PDK_20s1918041g001
I
0.664
POPTR_0018s05530
Populus trichocarpa
POPTR_0018s05530
I
0.664
POPTR_0006s23810
Populus trichocarpa
POPTR_0006s23810
I
0.663
cassava6228.valid.m1
Manihot esculenta
cassava6228.valid.m1
I
0.663
MDP0000184538
Malus domestica
MDP0000184538
I
0.662