POPTR_0018s12780 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0018s12780 T278528_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0018s12780.1 Myb 12 59
POPTR_0018s12780.1 Myb 65 110

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

57 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SapurV1A.0034s0330 Salix purpurea SapurV1A.0034s0330 N 0.884
POPTR_0006s06530 Populus trichocarpa POPTR_0006s06530 N 0.879
cassava32672.m1 Manihot esculenta cassava32672.m1 I 0.858
PK01088.1 Cannabis sativa PK01088.1 I 0.858
Pm027586 Prunus mume Pm027586 I 0.848
SapurV1A.2191s0020 Salix purpurea SapurV1A.2191s0020 N 0.846
SapurV1A.0197s0090 Salix purpurea SapurV1A.0197s0090 N 0.846
evm.TU.supercontig_46.32 Carica papaya evm.TU.supercontig_46.32 I 0.846
MDP0000264051 Malus domestica MDP0000264051 I 0.845
Cla016951 Citrullus lanatus Cla016951 I 0.845
Gorai.001G044000 Gossypium raimondii Gorai.001G044000 I 0.841
PRUPE_ppa016532mg Prunus persica PRUPE_ppa016532mg I 0.837
Eucgr.C01374 Eucalyptus grandis Eucgr.C01374 I 0.833
MDP0000167314 Malus domestica MDP0000167314 I 0.832
TCM_038131 Theobroma cacao TCM_038131 I 0.830
gene31098-v1.0-hybrid Fragaria vesca gene31098-v1.0-hybrid I 0.829
Cucsa.132300 Cucumis sativus Cucsa.132300 N 0.821
Bo2g047590 Brassica oleracea Bo2g047590 I 0.819
Thhalv10014754m.g Eutrema salsugineum Thhalv10014754m.g I 0.811
Bra022602 Brassica rapa Bra022602 I 0.808
Carubv10028642m.g Capsella rubella Carubv10028642m.g I 0.807
Cagra.0084s0008 Capsella grandiflora Cagra.0084s0008 I 0.807
MYB82 Arabidopsis thaliana AT5G52600 I 0.807
Bostr.7305s0011 Boechera stricta Bostr.7305s0011 I 0.802
Gorai.004G276500 Gossypium raimondii Gorai.004G276500 N 0.798
mgf023205m Mimulus guttatus mgf023205m I 0.786
AtMYB82 Arabidopsis lyrata Al_scaffold_0008_1642 I 0.785
Solyc07g008010.2 Solanum lycopersicum Solyc07g008010.2 I 0.769
PGSC0003DMG400030913 Solanum tuberosum PGSC0003DMG400030913 I 0.769
Bra029113 Brassica rapa Bra029113 I 0.768
Bo3g023140 Brassica oleracea Bo3g023140 I 0.768
VIT_11s0016g05660 Vitis vinifera VIT_11s0016g05660 N 0.724
VIT_11s0016g05690 Vitis vinifera VIT_11s0016g05690 N 0.720
cassava29820.valid.m1 Manihot esculenta cassava29820.valid.m1 I 0.703
GLYMA10G35050 Glycine max GLYMA10G35050 I 0.693
GSMUA_Achr3G07940_001 Musa acuminata GSMUA_Achr3G07940_001 I 0.676
AMTR_s00024p00224850 Amborella trichopoda AMTR_s00024p00224850 I 0.675
Eucgr.B00866 Eucalyptus grandis Eucgr.B00866 I 0.675
GLYMA19G44660 Glycine max GLYMA19G44660 I 0.674
PRUPE_ppa019380mg Prunus persica PRUPE_ppa019380mg I 0.674
Gorai.004G150800 Gossypium raimondii Gorai.004G150800 I 0.672
GLYMA20G32510 Glycine max GLYMA20G32510 I 0.672
gene15390-v1.0-hybrid Fragaria vesca gene15390-v1.0-hybrid I 0.671
AMTR_s00024p00224470 Amborella trichopoda AMTR_s00024p00224470 I 0.671
Pm029489 Prunus mume Pm029489 I 0.670
PDK_20s1310471g002 Phoenix dactylifera PDK_20s1310471g002 I 0.669
TCM_037379 Theobroma cacao TCM_037379 I 0.668
AMTR_s00024p00224180 Amborella trichopoda AMTR_s00024p00224180 I 0.668
GSMUA_Achr3G07950_001 Musa acuminata GSMUA_Achr3G07950_001 I 0.668
GLYMA07G05960 Glycine max GLYMA07G05960 I 0.666
GLYMA16G02570 Glycine max GLYMA16G02570 I 0.666
SapurV1A.0710s0050 Salix purpurea SapurV1A.0710s0050 I 0.665
PDK_20s1918041g001 Phoenix dactylifera PDK_20s1918041g001 I 0.664
POPTR_0018s05530 Populus trichocarpa POPTR_0018s05530 I 0.664
POPTR_0006s23810 Populus trichocarpa POPTR_0006s23810 I 0.663
cassava6228.valid.m1 Manihot esculenta cassava6228.valid.m1 I 0.663
MDP0000184538 Malus domestica MDP0000184538 I 0.662