CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Sb10g024950
(
Sorghum bicolor
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Sb10g024950
T279339_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
OS02G0187700
M02327_2.00
Oryza sativa
NTAMCKGTHN
NDACMGKTAN
PBM
Weirauch et al.(2014)
pTH8645
0.833
0.934
MYB1
M07068_2.00
Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH
DWDRCSGTTWDWDNHNNHD
Dap-seq
OMalley et al.(2016)
MYB1_col_a
0.710
0.725
PK07741.1
M01277_2.00
Cannabis sativa
HAMCBRHHN
NDDYVGKTD
PBM
Lambert et al.(2019)
pTH11469
0.686
0.769
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Sb10g024950.1
Myb
11
57
RGPWSPEEDDALRRLVERHGARNWTAIGREIPGRSGKSCRLRWCNQL
Sb10g024950.1
Myb
63
106
RRPFTPEEDAAIVRAHARLGNRWAAIARLLPGRTDNAVKNHWNC
Links
Other
Myb/SANT
family TFs
Other
Sorghum bicolor
TFs
202 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Si006938m.g
Setaria italica
Si006938m.g
I
0.892
GRMZM5G803308
Zea mays
GRMZM5G803308
I
0.892
Pavir.Db00693
Panicum virgatum
Pavir.Db00693
I
0.892
Pavir.Da00404
Panicum virgatum
Pavir.Da00404
I
0.892
GRMZM2G078820
Zea mays
GRMZM2G078820
I
0.866
LPERR06G18380
Leersia perrieri
LPERR06G18380
I
0.853
GRMZM2G145444
Zea mays
GRMZM2G145444
I
0.851
Si017917m.g
Setaria italica
Si017917m.g
I
0.851
Pavir.J23512
Panicum virgatum
Pavir.J23512
I
0.851
LPERR02G05810
Leersia perrieri
LPERR02G05810
I
0.851
Sb04g005940
Sorghum bicolor
Sb04g005940
I
0.851
TRIUR3_25447
Triticum urartu
TRIUR3_25447
I
0.846
MLOC_63964
Hordeum vulgare
MLOC_63964
I
0.846
Pavir.Ab00649
Panicum virgatum
Pavir.Ab00649
I
0.842
ORUFI06G23790
Oryza rufipogon
ORUFI06G23790
I
0.836
ONIVA06G26080
Oryza nivara
ONIVA06G26080
I
0.836
OGLUM06G23260
Oryza glumaepatula
OGLUM06G23260
I
0.836
OS06G0637500
Oryza sativa
OS06G0637500
I
0.836
OMERI06G22090
Oryza meridionalis
OMERI06G22090
I
0.836
ORGLA06G0184100
Oryza glaberrima
ORGLA06G0184100
I
0.836
BGIOSGA020819
Oryza indica
BGIOSGA020819
I
0.836
OPUNC02G05820
Oryza punctata
OPUNC02G05820
I
0.833
ONIVA02G08210
Oryza nivara
ONIVA02G08210
I
0.833
OMERI02G07700
Oryza meridionalis
OMERI02G07700
I
0.833
ORUFI02G06760
Oryza rufipogon
ORUFI02G06760
I
0.833
ORGLA02G0061500
Oryza glaberrima
ORGLA02G0061500
I
0.833
OGLUM02G06640
Oryza glumaepatula
OGLUM02G06640
I
0.833
MLOC_7426
Hordeum vulgare
MLOC_7426
I
0.833
OS02G0187700
Oryza sativa
OS02G0187700
D
0.833
Traes_7DL_1FA87027B
Triticum aestivum
Traes_7DL_1FA87027B
I
0.822
BRADI3G06470
Brachypodium distachyon
BRADI3G06470
I
0.809
OPUNC06G19910
Oryza punctata
OPUNC06G19910
I
0.806
MLOC_64963
Hordeum vulgare
MLOC_64963
I
0.792
GRMZM2G087955
Zea mays
GRMZM2G087955
I
0.774
Pavir.J29846
Panicum virgatum
Pavir.J29846
I
0.772
MLOC_64817
Hordeum vulgare
MLOC_64817
I
0.759
Traes_5DL_92CBBE968
Triticum aestivum
Traes_5DL_92CBBE968
I
0.759
Traes_5BL_486D0D865
Triticum aestivum
Traes_5BL_486D0D865
I
0.759
BRADI4G08220
Brachypodium distachyon
BRADI4G08220
I
0.757
MTR_6g015455
Medicago truncatula
MTR_6g015455
I
0.755
Si032789m.g
Setaria italica
Si032789m.g
I
0.754
Pavir.Ba03084
Panicum virgatum
Pavir.Ba03084
I
0.754
Sb02g013010
Sorghum bicolor
Sb02g013010
I
0.754
ORUFI09G00360
Oryza rufipogon
ORUFI09G00360
I
0.750
OMERI08G05160
Oryza meridionalis
OMERI08G05160
I
0.750
ONIVA09G00250
Oryza nivara
ONIVA09G00250
I
0.750
OB09G10200
Oryza brachyantha
OB09G10200
I
0.750
OPUNC12G06260
Oryza punctata
OPUNC12G06260
I
0.750
BGIOSGA030245
Oryza indica
BGIOSGA030245
I
0.750
ORGLA09G0002900
Oryza glaberrima
ORGLA09G0002900
I
0.750
OBART09G00310
Oryza barthii
OBART09G00310
I
0.750
LPERR09G00910
Leersia perrieri
LPERR09G00910
I
0.750
OGLUM09G00340
Oryza glumaepatula
OGLUM09G00340
I
0.750
OS09G0106700
Oryza sativa
OS09G0106700
I
0.750
BRADI1G30252
Brachypodium distachyon
BRADI1G30252
I
0.749
cassava8939.m1
Manihot esculenta
cassava8939.m1
I
0.744
GRMZM2G050550
Zea mays
GRMZM2G050550
I
0.737
AMTR_s00007p00169630
Amborella trichopoda
AMTR_s00007p00169630
I
0.736
29801.m003096
Ricinus communis
29801.m003096
I
0.735
Cla022889
Citrullus lanatus
Cla022889
I
0.730
Cucsa.232630
Cucumis sativus
Cucsa.232630
I
0.730
GSMUA_Achr1G26140_001
Musa acuminata
GSMUA_Achr1G26140_001
I
0.726
TCM_033907
Theobroma cacao
TCM_033907
I
0.726
GSMUA_Achr3G13070_001
Musa acuminata
GSMUA_Achr3G13070_001
I
0.725
mgf023922m
Mimulus guttatus
mgf023922m
I
0.725
PGSC0003DMG400007994
Solanum tuberosum
PGSC0003DMG400007994
I
0.721
Solyc04g079360.1
Solanum lycopersicum
Solyc04g079360.1
I
0.721
POPTR_0007s10490
Populus trichocarpa
POPTR_0007s10490
I
0.720
GSMUA_Achr4G20150_001
Musa acuminata
GSMUA_Achr4G20150_001
I
0.716
VIT_03s0180g00210
Vitis vinifera
VIT_03s0180g00210
I
0.715
mgf003084m
Mimulus guttatus
mgf003084m
I
0.714
Eucgr.F00002
Eucalyptus grandis
Eucgr.F00002
I
0.713
mgf006151m
Mimulus guttatus
mgf006151m
I
0.713
GLYMA17G35620
Glycine max
GLYMA17G35620
I
0.711
MYB1
Arabidopsis thaliana
AT3G09230
D
0.710
orange1.1g040502m.g
Citrus sinensis
orange1.1g040502m.g
I
0.710
Ciclev10029124m.g
Citrus clementina
Ciclev10029124m.g
I
0.710
Cucsa.123440
Cucumis sativus
Cucsa.123440
I
0.708
Eucgr.E02958
Eucalyptus grandis
Eucgr.E02958
I
0.705
Cla021015
Citrullus lanatus
Cla021015
I
0.705
POPTR_0002s13030
Populus trichocarpa
POPTR_0002s13030
I
0.703
GSMUA_Achr9G22600_001
Musa acuminata
GSMUA_Achr9G22600_001
I
0.702
e_gw1.53.214.1
Physcomitrella patens
e_gw1.53.214.1
I
0.701
chr2.LjT13M01.180.nd
Lotus japonicus
chr2.LjT13M01.180.nd
I
0.701
e_gw1.72.10.1
Physcomitrella patens
e_gw1.72.10.1
I
0.701
PK29071.1
Cannabis sativa
PK29071.1
I
0.700
chr5.CM0096.100.nc
Lotus japonicus
chr5.CM0096.100.nc
I
0.700
SapurV1A.0525s0230
Salix purpurea
SapurV1A.0525s0230
I
0.700
Aquca_007_00580
Aquilegia coerulea
Aquca_007_00580
I
0.700
Gorai.012G149000
Gossypium raimondii
Gorai.012G149000
I
0.699
VIT_18s0001g11170
Vitis vinifera
VIT_18s0001g11170
I
0.698
Pm018862
Prunus mume
Pm018862
I
0.697
TRAES3BF039800050CFD_g
Triticum aestivum
TRAES3BF039800050CFD_g
I
0.696
MLOC_10322
Hordeum vulgare
MLOC_10322
I
0.696
GLYMA05G21220
Glycine max
GLYMA05G21220
I
0.694
gw1.10.6.1
Physcomitrella patens
gw1.10.6.1
I
0.693
gene09039-v1.0-hybrid
Fragaria vesca
gene09039-v1.0-hybrid
I
0.693
MDP0000284922
Malus domestica
MDP0000284922
I
0.693
GSMUA_Achr3G28230_001
Musa acuminata
GSMUA_Achr3G28230_001
I
0.692
GSMUA_Achr4G12950_001
Musa acuminata
GSMUA_Achr4G12950_001
I
0.691
GSMUA_Achr4G09450_001
Musa acuminata
GSMUA_Achr4G09450_001
I
0.691
Eucgr.J00250
Eucalyptus grandis
Eucgr.J00250
I
0.690
POPTR_0005s18620
Populus trichocarpa
POPTR_0005s18620
I
0.690
CM0528.210.nd
Lotus japonicus
CM0528.210.nd
I
0.690
cassava7558.valid.m1
Manihot esculenta
cassava7558.valid.m1
I
0.689
LPERR05G10150
Leersia perrieri
LPERR05G10150
I
0.688
GLYMA04G04490
Glycine max
GLYMA04G04490
I
0.688
Thhalv10021963m.g
Eutrema salsugineum
Thhalv10021963m.g
I
0.688
AtMYB1
Arabidopsis lyrata
scaffold_301043.1
I
0.688
GSMUA_AchrUn_randomG01280_001
Musa acuminata
GSMUA_AchrUn_randomG01280_001
I
0.688
30170.m013927
Ricinus communis
30170.m013927
I
0.686
Ciclev10002239m.g
Citrus clementina
Ciclev10002239m.g
I
0.686
SapurV1A.0017s0390
Salix purpurea
SapurV1A.0017s0390
I
0.686
orange1.1g025351m.g
Citrus sinensis
orange1.1g025351m.g
I
0.686
mgf018580m
Mimulus guttatus
mgf018580m
I
0.686
evm.TU.supercontig_376.4
Carica papaya
evm.TU.supercontig_376.4
I
0.686
PK07741.1
Cannabis sativa
PK07741.1
D
0.686
Eucgr.F00031
Eucalyptus grandis
Eucgr.F00031
I
0.684
Ciclev10031463m.g
Citrus clementina
Ciclev10031463m.g
I
0.683
SapurV1A.0167s0310
Salix purpurea
SapurV1A.0167s0310
I
0.683
PGSC0003DMG400020338
Solanum tuberosum
PGSC0003DMG400020338
I
0.683
POPTR_0002s12410
Populus trichocarpa
POPTR_0002s12410
I
0.683
Solyc09g011780.2
Solanum lycopersicum
Solyc09g011780.2
I
0.683
orange1.1g012494m.g
Citrus sinensis
orange1.1g012494m.g
I
0.683
cassava1242.valid.m1
Manihot esculenta
cassava1242.valid.m1
I
0.683
evm.TU.supercontig_19.238
Carica papaya
evm.TU.supercontig_19.238
I
0.683
TCM_007138
Theobroma cacao
TCM_007138
I
0.682
Gorai.010G023500
Gossypium raimondii
Gorai.010G023500
I
0.682
gene26289-v1.0-hybrid
Fragaria vesca
gene26289-v1.0-hybrid
I
0.682
SELMODRAFT_99462
Selaginella moellendorffii
SELMODRAFT_99462
I
0.682
SELMODRAFT_103999
Selaginella moellendorffii
SELMODRAFT_103999
I
0.682
PK17282.1
Cannabis sativa
PK17282.1
I
0.681
GLYMA14G06870
Glycine max
GLYMA14G06870
I
0.681
Cagra.2515s0014
Capsella grandiflora
Cagra.2515s0014
I
0.679
Carubv10013882m.g
Capsella rubella
Carubv10013882m.g
I
0.679
Gorai.011G278500
Gossypium raimondii
Gorai.011G278500
I
0.679
Gorai.010G016800
Gossypium raimondii
Gorai.010G016800
I
0.679
TCM_042629
Theobroma cacao
TCM_042629
I
0.679
gene20888-v1.0-hybrid
Fragaria vesca
gene20888-v1.0-hybrid
I
0.678
Lus10040239.g
Linum usitatissimum
Lus10040239.g
I
0.678
Lus10028250.g
Linum usitatissimum
Lus10028250.g
I
0.678
cassava47374.m1
Manihot esculenta
cassava47374.m1
I
0.678
Si001686m.g
Setaria italica
Si001686m.g
I
0.677
Sb03g039950
Sorghum bicolor
Sb03g039950
I
0.677
GRMZM2G169316
Zea mays
GRMZM2G169316
I
0.677
Pavir.Ea03398
Panicum virgatum
Pavir.Ea03398
I
0.677
Pavir.J13677
Panicum virgatum
Pavir.J13677
I
0.677
cassava16103.m1
Manihot esculenta
cassava16103.m1
I
0.677
Lus10021762.g
Linum usitatissimum
Lus10021762.g
I
0.676
MDP0000463846
Malus domestica
MDP0000463846
I
0.675
SapurV1A.0597s0060
Salix purpurea
SapurV1A.0597s0060
I
0.675
PRUPE_ppa008979mg
Prunus persica
PRUPE_ppa008979mg
I
0.675
orange1.1g022144m.g
Citrus sinensis
orange1.1g022144m.g
I
0.675
cassava46434.m1
Manihot esculenta
cassava46434.m1
I
0.675
Pm005332
Prunus mume
Pm005332
I
0.675
Ciclev10001979m.g
Citrus clementina
Ciclev10001979m.g
I
0.675
30170.m013698
Ricinus communis
30170.m013698
I
0.675
MDP0000807341
Malus domestica
MDP0000807341
I
0.673
SELMODRAFT_77255
Selaginella moellendorffii
SELMODRAFT_77255
I
0.672
Cla014191
Citrullus lanatus
Cla014191
I
0.672
SELMODRAFT_113522
Selaginella moellendorffii
SELMODRAFT_113522
I
0.672
MDP0000275800
Malus domestica
MDP0000275800
I
0.672
Cucsa.102710
Cucumis sativus
Cucsa.102710
I
0.672
gene00185-v1.0-hybrid
Fragaria vesca
gene00185-v1.0-hybrid
I
0.670
Lus10032764.g
Linum usitatissimum
Lus10032764.g
I
0.669
MDP0000894463
Malus domestica
MDP0000894463
I
0.669
VIT_18s0001g09850
Vitis vinifera
VIT_18s0001g09850
I
0.669
Gorai.009G208900
Gossypium raimondii
Gorai.009G208900
I
0.669
29970.m000987
Ricinus communis
29970.m000987
I
0.669
gene24027-v1.0-hybrid
Fragaria vesca
gene24027-v1.0-hybrid
I
0.669
PRUPE_ppa010735mg
Prunus persica
PRUPE_ppa010735mg
I
0.669
PRUPE_ppa008450mg
Prunus persica
PRUPE_ppa008450mg
I
0.669
Pm005220
Prunus mume
Pm005220
I
0.669
Lus10014103.g
Linum usitatissimum
Lus10014103.g
I
0.668
Cucsa.066910
Cucumis sativus
Cucsa.066910
I
0.666
Cla018417
Citrullus lanatus
Cla018417
I
0.666
MTR_4g019370
Medicago truncatula
MTR_4g019370
I
0.666
estExt_fgenesh4_pg.C_10375
Volvox carteri
estExt_fgenesh4_pg.C_10375
I
0.666
GLYMA14G09540
Glycine max
GLYMA14G09540
I
0.666
GLYMA01G26650
Glycine max
GLYMA01G26650
I
0.666
MDP0000203733
Malus domestica
MDP0000203733
I
0.666
Gorai.009G276400
Gossypium raimondii
Gorai.009G276400
I
0.666
AMTR_s00029p00183640
Amborella trichopoda
AMTR_s00029p00183640
I
0.666
MDP0000478512
Malus domestica
MDP0000478512
I
0.666
MDP0000319124
Malus domestica
MDP0000319124
I
0.666
Eucgr.H02226
Eucalyptus grandis
Eucgr.H02226
I
0.666
GLYMA03G15810
Glycine max
GLYMA03G15810
I
0.666
GLYMA14G06320
Glycine max
GLYMA14G06320
I
0.665
GSMUA_Achr5G28780_001
Musa acuminata
GSMUA_Achr5G28780_001
I
0.663
SapurV1A.0709s0060
Salix purpurea
SapurV1A.0709s0060
I
0.663
GSMUA_Achr6G33470_001
Musa acuminata
GSMUA_Achr6G33470_001
I
0.663
PRUPE_ppa006851mg
Prunus persica
PRUPE_ppa006851mg
I
0.663
27798.m000612
Ricinus communis
27798.m000612
I
0.663
Eucgr.F02372
Eucalyptus grandis
Eucgr.F02372
I
0.663
Gorai.006G179700
Gossypium raimondii
Gorai.006G179700
I
0.663
TCM_021796
Theobroma cacao
TCM_021796
I
0.663
mgf015566m
Mimulus guttatus
mgf015566m
I
0.663
Ca_02182
Cicer arietinum
Ca_02182
I
0.663
cassava2215.valid.m1
Manihot esculenta
cassava2215.valid.m1
I
0.663
Pm002576
Prunus mume
Pm002576
I
0.663
Lus10010238.g
Linum usitatissimum
Lus10010238.g
I
0.662
gene21001-v1.0-hybrid
Fragaria vesca
gene21001-v1.0-hybrid
I
0.662