scaffold_104540.1 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 scaffold_104540.1 T279368_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G49010
M01269_2.00 		Arabidopsis thaliana
NNYWATCNN
NNGATWRNN		 PBM
Lambert et al.(2019)
pTH11535 		0.895 0.978
AT1G49010
M07022_2.00 		Arabidopsis thaliana
NHHWWYCTTATCYWH
DWRGATAAGRWWDDN		 Dap-seq
OMalley et al.(2016)
At1g49010_col_a 		0.895 0.978
AT1G49010
M07023_2.00 		Arabidopsis thaliana
WWYCTTATCYWHWHH
DDWDWRGATAAGRWW		 Dap-seq
OMalley et al.(2016)
At1g49010_colamp_a 		0.895 0.978
PK19621.1
M01280_2.00 		Cannabis sativa
NNTTATCYN
NRGATAANN		 PBM
Lambert et al.(2019)
pTH10140 		0.708 0.824
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_104540.1 Myb 132 177

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT1G49010 Arabidopsis thaliana AT1G49010 D 0.895
Bostr.26675s0270 Boechera stricta Bostr.26675s0270 I 0.876
Cagra.1613s0002 Capsella grandiflora Cagra.1613s0002 I 0.848
Carubv10009808m.g Capsella rubella Carubv10009808m.g I 0.848
Thhalv10011650m.g Eutrema salsugineum Thhalv10011650m.g I 0.822
Bo6g018000 Brassica oleracea Bo6g018000 I 0.796
Bra018772 Brassica rapa Bra018772 I 0.788
Ciclev10021342m.g Citrus clementina Ciclev10021342m.g I 0.761
TCM_012262 Theobroma cacao TCM_012262 I 0.760
SapurV1A.0583s0020 Salix purpurea SapurV1A.0583s0020 I 0.757
Solyc03g119740.2 Solanum lycopersicum Solyc03g119740.2 I 0.752
Eucgr.K02659 Eucalyptus grandis Eucgr.K02659 I 0.749
Bra014169 Brassica rapa Bra014169 I 0.745
POPTR_0012s05720 Populus trichocarpa POPTR_0012s05720 I 0.732
Bo00685s060 Brassica oleracea Bo00685s060 I 0.732
Gorai.006G063000 Gossypium raimondii Gorai.006G063000 I 0.730
GLYMA05G07980 Glycine max GLYMA05G07980 I 0.728
Ca_06612 Cicer arietinum Ca_06612 I 0.719
30174.m008717 Ricinus communis 30174.m008717 I 0.717
chr4.LjB15O07.50.nc Lotus japonicus chr4.LjB15O07.50.nc I 0.714
gene26214-v1.0-hybrid Fragaria vesca gene26214-v1.0-hybrid I 0.709
GLYMA17G13010 Glycine max GLYMA17G13010 I 0.708
PK19621.1 Cannabis sativa PK19621.1 D 0.708
Pm030197 Prunus mume Pm030197 I 0.704
PRUPE_ppa009092mg Prunus persica PRUPE_ppa009092mg I 0.704
MTR_4g111975 Medicago truncatula MTR_4g111975 I 0.702
cassava2458.valid.m1 Manihot esculenta cassava2458.valid.m1 N 0.670
VIT_17s0000g04130 Vitis vinifera VIT_17s0000g04130 I 0.661