scaffold_301453.1 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 scaffold_301453.1 T279380_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PHL12
M01077_2.00
Arabidopsis thaliana
NWKATTCBNN

NNVGAATMWN
PBM
Sullivan et al.(2014)
pTH7098
0.909 1.000
PHL12
M07079_2.00
Arabidopsis thaliana
RGAATATTCYYTWN

NWARRGAATATTCY
Dap-seq
OMalley et al.(2016)
At3g12730_col_a
0.909 1.000
PHL12
M07080_2.00
Arabidopsis thaliana
NNRAAKATTCBHHN

NDDVGAATMTTYNN
Dap-seq
OMalley et al.(2016)
At3g12730_colamp_a
0.909 1.000
AT3G24120
M00729_2.00
Arabidopsis thaliana
NNKATDCBNN

NNVGHATMNN
PBM
Chang et al.(2013)
pTH7086
0.831 0.957
AT3G24120
M07085_2.00
Arabidopsis thaliana
HAKATTCB

VGAATMTD
Dap-seq
OMalley et al.(2016)
At3g24120_col_a
0.831 0.957
AT3G24120
M07086_2.00
Arabidopsis thaliana
NDRAAKATTCBHHN

NDDVGAATMTTYHN
Dap-seq
OMalley et al.(2016)
At3g24120_colamp_a
0.831 0.957
UNE16
M01270_2.00
Arabidopsis thaliana
NWKATTCBNN

NNVGAATMWN
PBM
Lambert et al.(2019)
pTH9967
0.797 0.936
MYR1
M02309_2.00
Arabidopsis thaliana
NKATNCBNNN

NNNVGNATMN
PBM
Weirauch et al.(2014)
pTH8859
0.753 0.809
MYR2
M02294_2.00
Arabidopsis thaliana
NKATDCBNN

NNVGHATMN
PBM
Weirauch et al.(2014)
pTH7097
0.747 0.787
MYR2
M07063_2.00
Arabidopsis thaliana
NNDAAKATTCYHHN

NDDRGAATMTTHNN
Dap-seq
OMalley et al.(2016)
At3g04030_col_a
0.747 0.787
MYR2
M07064_2.00
Arabidopsis thaliana
VRAAKATTCBHWNNN

NNNWDVGAATMTTYB
Dap-seq
OMalley et al.(2016)
At3g04030_colamp_a
0.747 0.787
PHL11
M07134_2.00
Arabidopsis thaliana
NNRAAKATTCYHHN

NDDRGAATMTTYNN
Dap-seq
OMalley et al.(2016)
AT5G45580_col_a
0.738 0.745
PHL11
M07135_2.00
Arabidopsis thaliana
NRAAKATTCYHHNN

NNDDRGAATMTTYN
Dap-seq
OMalley et al.(2016)
AT5G45580_colamp_a
0.738 0.745
PHL7
M02292_2.00
Arabidopsis thaliana
NWGATDCBNN

NNVGHATCWN
PBM
Weirauch et al.(2014)
pTH7253
0.730 0.809
PK10342.1
M02351_2.00
Cannabis sativa
WAGATKCS

SGMATCTW
PBM
Weirauch et al.(2014)
pTH9489
0.730 0.809
PHL7
M07040_2.00
Arabidopsis thaliana
DRNAKATTCBNHNNN

NNNDNVGAATMTNYH
Dap-seq
OMalley et al.(2016)
At2g01060_colamp_a
0.730 0.809
PHL7
M07041_2.00
Arabidopsis thaliana
VGAATATTCBNHH

DDNVGAATATTCB
Dap-seq
OMalley et al.(2016)
At2g01060_col
0.730 0.809
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_301453.1 Myb 25 76

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

700 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ANCCEY_11381 Ancylostoma ceylanicum ANCCEY_11381 N 0.000
ASIM_0001118301 Anisakis simplex ASIM_0001118301 N 0.000
ASU_11830 Ascaris suum ASU_11830 N 0.000
Bm3100 Brugia malayi Bm3100 N 0.000
BTMF_0001372201 Brugia timori BTMF_0001372201 N 0.000
CBG24087 Caenorhabditis briggsae CBG24087 N 0.000
CBN15046 Caenorhabditis brenneri CBN15046 N 0.000
CJA09664 Caenorhabditis japonica CJA09664 N 0.000
CRE20463 Caenorhabditis remanei CRE20463 N 0.000
DICVIV_01724 Dictyocaulus viviparus DICVIV_01724 N 0.000
EVEC_0000745001 Enterobius vermicularis EVEC_0000745001 N 0.000
GPUH_0001426001 Gongylonema pulchrum GPUH_0001426001 N 0.000
L596_g10263 Steinernema carpocapsae L596_g10263 N 0.000
L596_g19739 Steinernema carpocapsae L596_g19739 N 0.000
L889_g19003 Steinernema feltiae L889_g19003 N 0.000
L889_g5738 Steinernema feltiae L889_g5738 N 0.000
L892_g30928 Steinernema scapterisci L892_g30928 N 0.000
L892_g992 Steinernema scapterisci L892_g992 N 0.000
L893_g8389 Steinernema glaseri L893_g8389 N 0.000
LOAG_04530 Loa loa LOAG_04530 N 0.000
NBR_0001465701 Nippostrongylus brasiliensis NBR_0001465701 N 0.000
nDi.2.2.2.g03160 Dirofilaria immitis nDi.2.2.2.g03160 N 0.000
nhr-19 Caenorhabditis elegans WBGene00003618 N 0.000
nOo.2.0.1.g00297 Onchocerca ochengi nOo.2.0.1.g00297 N 0.000
OESDEN_14708 Oesophagostomum dentatum OESDEN_14708 N 0.000
OFLC_0001424701 Onchocerca flexuosa OFLC_0001424701 N 0.000
PEQ_0000498301 Parascaris equorum PEQ_0000498301 N 0.000
PTRK_0001622300 Parastrongyloides trichosuri PTRK_0001622300 N 0.000
RSKR_0000760200 Rhabditophanes kr3021 RSKR_0000760200 N 0.000
scaffold198-EXSNAP2012.12 Pristionchus exspectatus scaffold198-EXSNAP2012.12 N 0.000
SPAL_0001217500 Strongyloides papillosus SPAL_0001217500 N 0.000
SSTP_0001223600 Strongyloides stercoralis SSTP_0001223600 N 0.000
SVE_0910500 Strongyloides venezuelensis SVE_0910500 N 0.000
SVUK_0000031201 Strongylus vulgaris SVUK_0000031201 N 0.000
TCLT_0000237101 Thelazia callipaeda TCLT_0000237101 N 0.000
WBGene00247746 Onchocerca volvulus WBGene00247746 N 0.000