CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Si021484m.g
(
Setaria italica
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Si021484m.g
T279818_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB3R5
M07116_2.00
Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN
Dap-seq
OMalley et al.(2016)
MYB3R5_col_a
0.670
0.771
PC-MYB1
M07110_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R1_col_a
0.666
0.714
PC-MYB1
M07111_2.00
Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH
Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a
0.666
0.714
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Si021484m
Myb
68
114
KGGWTLDEDEKLRKAVGACNGKNWKKIAESFPDRTSVQCLHRWQKVL
Si021484m
Myb
120
166
KGPWTQEEDDIIINMVKKYGPKKWSLIARSLDGRIGKQCRERWHNHL
Si021484m
Myb
172
217
KEAWSVEEERVVADAHRLHGNKWAEIAKLLPGRTDNSIKNHWNSSL
Links
Other
Myb/SANT
family TFs
Other
Setaria italica
TFs
121 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy