CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Si029124m.g
(
Setaria italica
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Si029124m.g
T279859_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB88
M07042_2.00
Arabidopsis thaliana
NNNHNACGCKCCDHH
DDHGGMGCGTNDNNN
Dap-seq
OMalley et al.(2016)
MYB88_col_a
0.710
0.769
MYB88
M07043_2.00
Arabidopsis thaliana
NNNACGCTCCHNN
NNDGGAGCGTNNN
Dap-seq
OMalley et al.(2016)
MYB88_colamp_a
0.710
0.769
MYB88
M11038_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB88_01
0.710
0.769
MYB124
M01267_2.00
Arabidopsis thaliana
NNVCGCKCBN
NVGMGCGBNN
PBM
Lambert et al.(2019)
pTH11556
0.709
0.791
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Si029124m
Myb
34
79
VSWSAEEDSVLRAQIALHGTDNWTIIAAQFKDKTARQCRRRWYNYL
Si029124m
Myb
85
129
KGGWSREEDMLLCEAQKLLGNRWTEIAKVVSGRTDNAVKNRFSTL
Si029142m
Myb
34
79
VSWSAEEDSVLRAQIALHGTDNWTIIAAQFKDKTARQCRRRWYNYL
Si029142m
Myb
85
129
KGGWSREEDMLLCEAQKLLGNRWTEIAKVVSGRTDNAVKNRFSTL
Links
Other
Myb/SANT
family TFs
Other
Setaria italica
TFs
74 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Bb03405
Panicum virgatum
Pavir.Bb03405
I
0.870
Sb02g040050
Sorghum bicolor
Sb02g040050
I
0.862
Traes_2BS_F1B450FA4
Triticum aestivum
Traes_2BS_F1B450FA4
I
0.858
OBART07G22930
Oryza barthii
OBART07G22930
I
0.853
ORGLA07G0179200
Oryza glaberrima
ORGLA07G0179200
I
0.853
OPUNC07G21540
Oryza punctata
OPUNC07G21540
I
0.853
GRMZM2G064630
Zea mays
GRMZM2G064630
I
0.845
OGLUM07G22980
Oryza glumaepatula
OGLUM07G22980
I
0.836
BGIOSGA026188
Oryza indica
BGIOSGA026188
I
0.836
ORUFI07G24080
Oryza rufipogon
ORUFI07G24080
I
0.836
OS07G0627300
Oryza sativa
OS07G0627300
I
0.836
OB07G28520
Oryza brachyantha
OB07G28520
I
0.831
Traes_2AS_1161E1D2E
Triticum aestivum
Traes_2AS_1161E1D2E
I
0.826
Traes_2DS_9430AAD52
Triticum aestivum
Traes_2DS_9430AAD52
I
0.826
Pavir.J36475
Panicum virgatum
Pavir.J36475
I
0.816
TRIUR3_24509
Triticum urartu
TRIUR3_24509
N
0.810
LPERR07G19800
Leersia perrieri
LPERR07G19800
I
0.805
evm.TU.supercontig_183.27
Carica papaya
evm.TU.supercontig_183.27
I
0.740
cassava35260.valid.m1
Manihot esculenta
cassava35260.valid.m1
I
0.732
SapurV1A.0062s0030
Salix purpurea
SapurV1A.0062s0030
I
0.732
MDP0000165523
Malus domestica
MDP0000165523
I
0.732
Gorai.013G083300
Gossypium raimondii
Gorai.013G083300
I
0.732
cassava39089.m1
Manihot esculenta
cassava39089.m1
I
0.732
Gorai.005G139500
Gossypium raimondii
Gorai.005G139500
I
0.732
POPTR_0010s10310
Populus trichocarpa
POPTR_0010s10310
I
0.732
TCM_011776
Theobroma cacao
TCM_011776
I
0.732
GSMUA_Achr10G18880_001
Musa acuminata
GSMUA_Achr10G18880_001
I
0.729
OMERI03G12240
Oryza meridionalis
OMERI03G12240
N
0.728
Carubv10011707m.g
Capsella rubella
Carubv10011707m.g
I
0.724
Cagra.3501s0066
Capsella grandiflora
Cagra.3501s0066
I
0.724
Bostr.13671s0016
Boechera stricta
Bostr.13671s0016
I
0.724
MDP0000210970
Malus domestica
MDP0000210970
I
0.718
PDK_20s1473891g001
Phoenix dactylifera
PDK_20s1473891g001
I
0.715
29736.m002013
Ricinus communis
29736.m002013
I
0.712
ONIVA07G22540
Oryza nivara
ONIVA07G22540
N
0.711
PRUPE_ppa017536mg
Prunus persica
PRUPE_ppa017536mg
I
0.710
MYB88
Arabidopsis lyrata
fgenesh2_kg.5__181__AT2G02820.2
I
0.710
Pm006532
Prunus mume
Pm006532
I
0.710
Thhalv10004109m.g
Eutrema salsugineum
Thhalv10004109m.g
I
0.710
Bo2g136560
Brassica oleracea
Bo2g136560
I
0.710
MYB88
Arabidopsis thaliana
AT2G02820
D
0.710
Solyc05g007160.2
Solanum lycopersicum
Solyc05g007160.2
I
0.709
PGSC0003DMG400025612
Solanum tuberosum
PGSC0003DMG400025612
I
0.709
MYB124
Arabidopsis thaliana
AT1G14350
D
0.709
Thhalv10007659m.g
Eutrema salsugineum
Thhalv10007659m.g
I
0.709
Bra019658
Brassica rapa
Bra019658
I
0.709
F775_07407
Aegilops tauschii
F775_07407
N
0.704
orange1.1g044977m.g
Citrus sinensis
orange1.1g044977m.g
I
0.702
MTR_5g038910
Medicago truncatula
MTR_5g038910
I
0.702
GLYMA08G40950
Glycine max
GLYMA08G40950
I
0.702
GLYMA02G02310
Glycine max
GLYMA02G02310
I
0.702
Ca_18779
Cicer arietinum
Ca_18779
I
0.702
Ciclev10031405m.g
Citrus clementina
Ciclev10031405m.g
I
0.702
Bo5g019500
Brassica oleracea
Bo5g019500
I
0.700
VIT_01s0026g01910
Vitis vinifera
VIT_01s0026g01910
I
0.699
Cla010333
Citrullus lanatus
Cla010333
I
0.697
Cucsa.285270
Cucumis sativus
Cucsa.285270
I
0.697
Lus10012847.g
Linum usitatissimum
Lus10012847.g
I
0.696
Lus10030494.g
Linum usitatissimum
Lus10030494.g
I
0.696
PK05123.1
Cannabis sativa
PK05123.1
I
0.693
POPTR_0008s14790
Populus trichocarpa
POPTR_0008s14790
I
0.693
GLYMA01G05190
Glycine max
GLYMA01G05190
I
0.693
SapurV1A.0200s0020
Salix purpurea
SapurV1A.0200s0020
I
0.693
Eucgr.G02522
Eucalyptus grandis
Eucgr.G02522
I
0.688
Bo7g080730
Brassica oleracea
Bo7g080730
I
0.688
Bra024804
Brassica rapa
Bra024804
I
0.688
MTR_8g468380
Medicago truncatula
MTR_8g468380
I
0.683
Aquca_002_00543
Aquilegia coerulea
Aquca_002_00543
I
0.682
Eucgr.B03417
Eucalyptus grandis
Eucgr.B03417
I
0.682
Bostr.0556s0099
Boechera stricta
Bostr.0556s0099
I
0.680
FLP
Arabidopsis lyrata
fgenesh2_kg.1__1561__AT1G14350.1
I
0.679
mgf009409m
Mimulus guttatus
mgf009409m
I
0.679
GLYMA18G16040
Glycine max
GLYMA18G16040
I
0.672