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snap_masked-pir_contig_160-abinit-gene-0.52
(Pythium irregulare)
Myb/SANT
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TF Information |
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| Pfam ID |
Interpro ID |
Gene ID |
CIS-BP ID |
Sequence source |
Animal TF db |
| PF00249 (Myb_DNA-binding) |
IPR014778 |
snap_masked-pir_contig_160-abinit-gene-0.52 |
T279993_2.00 |
Ensembl (2018-Dec-8) |
Link out |
| NCBI Gene Info:This gene encodes a tumor suppressor protein containing transcriptional activation, DNA binding, and oligomerization domains. The encoded protein responds to diverse cellular stresses to regulate expression of target genes, thereby inducing cell cycle arrest, apoptosis, senescence, DNA repair, or changes in metabolism. Mutations in this gene are associated with a variety of human cancers, including hereditary cancers such as Li-Fraumeni syndrome. Alternative splicing of this gene and the use of alternate promoters result in multiple transcript variants and isoforms. Additional isoforms have also been shown to result from the use of alternate translation initiation codons from identical transcript variants (PMIDs: 12032546, 20937277). [provided by RefSeq, Dec 2016] |
Directly determined binding motifs |
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| Name/Motif ID |
Species |
Forward |
Reverse |
Type/Study/Study ID |
SR
Score |
DBD
Identity |
| No direct experiments |
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Motifs from related TFs |
|---|
| Name/Motif ID |
Species |
Forward |
Reverse |
Type/Study/Study ID |
SR
Score |
DBD
Identity |
Phyra73031
M02332_2.00 |
Phytophthora ramorum |
NDRKTCAGTN |
NACTGAMYHN |
PBM
Weirauch et al.(2014)
pTH7816
|
0.682
|
0.727
|
| For this family, TFs with SR scores > 0.661 will likely have a similar motif |