CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc01g079620.2
(
Solanum lycopersicum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Solyc01g079620.2
T280031_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK06182.1
M02349_2.00
Cannabis sativa
WTACCTACCN
NGGTAGGTAW
PBM
Weirauch et al.(2014)
pTH9581
0.848
0.882
MYB111
M00882_2.00
Arabidopsis thaliana
NNNAMCDAMY
RKTHGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB111
0.795
0.871
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc01g079620.2.1
Myb
14
61
RGRWTAEEDQILTNYIISNGEGSWRSLPKNAGLLRCGKSCRLRWINYL
Solyc01g079620.2.1
Myb
67
112
RGNITSQEEDIIIKLHATLGNRWSLIAEHLSGRTDNEIKNYWNSHL
Links
Other
Myb/SANT
family TFs
Other
Solanum lycopersicum
TFs
165 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy