Solyc01g106940.2 (Solanum lycopersicum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Solyc01g106940.2 T280039_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
TRB1
M01070_2.00
Arabidopsis thaliana
WRMCCTAR

YTAGGKYW
PBM
Sullivan et al.(2014)
pTH7117
0.775 0.826
TRB2
M02314_2.00
Arabidopsis thaliana
WRMCCTAR

YTAGGKYW
PBM
Weirauch et al.(2014)
pTH7094
0.725 0.826
TRB2
M01083_2.00
Arabidopsis thaliana
HRMCCTAR

YTAGGKYD
PBM
Sullivan et al.(2014)
pTH7260
0.725 0.826
TRB2
M07157_2.00
Arabidopsis thaliana
HHHHHNWWRCCCTAAWHHN

NDDWTTAGGGYWWNDDDDD
Dap-seq
OMalley et al.(2016)
TBP3_col_a
0.725 0.826
TRB2
M07158_2.00
Arabidopsis thaliana
HVDHHHNWARCCCTAAHYH

DRDTTAGGGYTWNDDDHBD
Dap-seq
OMalley et al.(2016)
TBP3_colamp_a
0.725 0.826
OS01G0708000
M02326_2.00
Oryza sativa
WRMCCTAVNN

NNBTAGGKYW
PBM
Weirauch et al.(2014)
pTH8716
0.702 0.761
PK06103.1
M02348_2.00
Cannabis sativa
TGCCCTAG

CTAGGGCA
PBM
Weirauch et al.(2014)
pTH9649
0.668 0.804
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc01g106940.2.1 Myb 5 56

Links

Other Myb/SANT family TFs
Other Solanum lycopersicum TFs

177 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00007p00193000 Amborella trichopoda AMTR_s00007p00193000 I 0.826
AMTR_s00036p00166880 Amborella trichopoda AMTR_s00036p00166880 I 0.670
Aquca_004_00181 Aquilegia coerulea Aquca_004_00181 I 0.704
scaffold_101953.1 Arabidopsis lyrata scaffold_101953.1 I 0.691
TRB1 Arabidopsis lyrata fgenesh2_kg.1__4077__AT1G49950.2 I 0.775
TRB2 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8002157 I 0.725
TRB3 Arabidopsis lyrata fgenesh2_kg.5__1337__AT3G49850.1 I 0.716
TRB2 Arabidopsis thaliana AT5G67580 D 0.725
TRB3 Arabidopsis thaliana AT3G49850 I 0.755
TRB1 Arabidopsis thaliana AT1G49950 D 0.775
AT1G17520 Arabidopsis thaliana AT1G17520 I 0.691
Bostr.7128s0363 Boechera stricta Bostr.7128s0363 I 0.670
Bostr.0568s0184 Boechera stricta Bostr.0568s0184 I 0.734
Bostr.6864s0256 Boechera stricta Bostr.6864s0256 I 0.716
Bostr.26675s0174 Boechera stricta Bostr.26675s0174 I 0.775
BRADI4G01770 Brachypodium distachyon BRADI4G01770 I 0.662
BRADI2G42240 Brachypodium distachyon BRADI2G42240 I 0.788
Bo9g019040 Brassica oleracea Bo9g019040 I 0.734
Bo8g067280 Brassica oleracea Bo8g067280 I 0.679
Bo1g081300 Brassica oleracea Bo1g081300 I 0.682
Bo3g096520 Brassica oleracea Bo3g096520 I 0.734
Bo5g023860 Brassica oleracea Bo5g023860 I 0.679
Bo6g116150 Brassica oleracea Bo6g116150 I 0.678
Bo5g077530 Brassica oleracea Bo5g077530 I 0.769
Bo6g018740 Brassica oleracea Bo6g018740 I 0.775
Bo8g104830 Brassica oleracea Bo8g104830 I 0.669
Bra037837 Brassica rapa Bra037837 I 0.734
Bra039650 Brassica rapa Bra039650 I 0.769
Bra016037 Brassica rapa Bra016037 I 0.678
Bra016598 Brassica rapa Bra016598 I 0.679
Bra018818 Brassica rapa Bra018818 I 0.775
Bra024438 Brassica rapa Bra024438 I 0.734
Bra037839 Brassica rapa Bra037839 I 0.734
Bra030992 Brassica rapa Bra030992 I 0.677
Bra029978 Brassica rapa Bra029978 I 0.682
Bra025967 Brassica rapa Bra025967 I 0.679
PK06103.1 Cannabis sativa PK06103.1 D 0.668
PK19870.1 Cannabis sativa PK19870.1 I 0.704
Cagra.0342s0046 Capsella grandiflora Cagra.0342s0046 I 0.734
Cagra.0824s0121 Capsella grandiflora Cagra.0824s0121 I 0.679
Cagra.2826s0004 Capsella grandiflora Cagra.2826s0004 I 0.775
Cagra.4491s0006 Capsella grandiflora Cagra.4491s0006 I 0.716
Carubv10009836m.g Capsella rubella Carubv10009836m.g I 0.775
Carubv10009890m.g Capsella rubella Carubv10009890m.g I 0.679
Carubv10017722m.g Capsella rubella Carubv10017722m.g I 0.716
Carubv10026874m.g Capsella rubella Carubv10026874m.g I 0.734
evm.TU.supercontig_106.31 Carica papaya evm.TU.supercontig_106.31 I 0.687
evm.TU.supercontig_25.81 Carica papaya evm.TU.supercontig_25.81 I 0.724
Ca_08043 Cicer arietinum Ca_08043 I 0.676
Ca_09355 Cicer arietinum Ca_09355 I 0.668
Ca_02232 Cicer arietinum Ca_02232 I 0.668
Cla012798 Citrullus lanatus Cla012798 I 0.687
Cla006547 Citrullus lanatus Cla006547 I 0.704
Cla014248 Citrullus lanatus Cla014248 I 0.668
Ciclev10026245m.g Citrus clementina Ciclev10026245m.g I 0.679
Ciclev10028926m.g Citrus clementina Ciclev10028926m.g I 0.704
Ciclev10026089m.g Citrus clementina Ciclev10026089m.g I 0.680
orange1.1g020653m.g Citrus sinensis orange1.1g020653m.g I 0.680
orange1.1g022048m.g Citrus sinensis orange1.1g022048m.g I 0.704
orange1.1g023740m.g Citrus sinensis orange1.1g023740m.g I 0.679
Cucsa.298390 Cucumis sativus Cucsa.298390 I 0.704
Cucsa.103240 Cucumis sativus Cucsa.103240 I 0.668
Cucsa.341020 Cucumis sativus Cucsa.341020 I 0.687
Eucgr.I01053 Eucalyptus grandis Eucgr.I01053 I 0.704
Thhalv10011686m.g Eutrema salsugineum Thhalv10011686m.g I 0.775
Thhalv10010562m.g Eutrema salsugineum Thhalv10010562m.g I 0.716
Thhalv10008387m.g Eutrema salsugineum Thhalv10008387m.g I 0.679
Thhalv10004691m.g Eutrema salsugineum Thhalv10004691m.g I 0.734
gene25445-v1.0-hybrid Fragaria vesca gene25445-v1.0-hybrid I 0.676
gene05764-v1.0-hybrid Fragaria vesca gene05764-v1.0-hybrid I 0.693
GLYMA01G40220 Glycine max GLYMA01G40220 I 0.668
GLYMA05G22500 Glycine max GLYMA05G22500 I 0.668
GLYMA07G00930 Glycine max GLYMA07G00930 I 0.699
GLYMA08G20270 Glycine max GLYMA08G20270 I 0.699
GLYMA11G05070 Glycine max GLYMA11G05070 I 0.668
GLYMA17G17370 Glycine max GLYMA17G17370 I 0.668
Gorai.009G143000 Gossypium raimondii Gorai.009G143000 I 0.666
Gorai.003G030800 Gossypium raimondii Gorai.003G030800 I 0.680
Gorai.005G230800 Gossypium raimondii Gorai.005G230800 I 0.738
Gorai.007G224200 Gossypium raimondii Gorai.007G224200 I 0.680
MLOC_10278 Hordeum vulgare MLOC_10278 I 0.662
LPERR01G18090 Leersia perrieri LPERR01G18090 I 0.699
Lus10033775.g Linum usitatissimum Lus10033775.g I 0.704
Lus10025203.g Linum usitatissimum Lus10025203.g I 0.678
Lus10012092.g Linum usitatissimum Lus10012092.g I 0.678
Lus10014653.g Linum usitatissimum Lus10014653.g I 0.704
LjT25P15.150.nd Lotus japonicus LjT25P15.150.nd I 0.668
MDP0000239354 Malus domestica MDP0000239354 I 0.668
cassava19326.valid.m1 Manihot esculenta cassava19326.valid.m1 I 0.704
cassava37744.valid.m1 Manihot esculenta cassava37744.valid.m1 I 0.703
cassava7508.valid.m1 Manihot esculenta cassava7508.valid.m1 I 0.668
cassava34930.m1 Manihot esculenta cassava34930.m1 I 0.687
MTR_4g097130 Medicago truncatula MTR_4g097130 I 0.668
MTR_5g015340 Medicago truncatula MTR_5g015340 I 0.668
MTR_8g494240 Medicago truncatula MTR_8g494240 I 0.687
MTR_1g041765 Medicago truncatula MTR_1g041765 I 0.676
MTR_0095s0040 Medicago truncatula MTR_0095s0040 I 0.666
EuGene.0000030935 Micromonas pusilla EuGene.0000030935 I 0.774
EuGene.0500010080 Micromonas sp RCC299 EuGene.0500010080 I 0.723
mgf004823m Mimulus guttatus mgf004823m I 0.676
mgf009594m Mimulus guttatus mgf009594m I 0.827
GSMUA_Achr7G01090_001 Musa acuminata GSMUA_Achr7G01090_001 I 0.742
GSMUA_Achr2G13040_001 Musa acuminata GSMUA_Achr2G13040_001 I 0.818
OBART01G28260 Oryza barthii OBART01G28260 I 0.702
OBART01G21150 Oryza barthii OBART01G21150 I 0.699
OB01G37330 Oryza brachyantha OB01G37330 I 0.702
OB01G30760 Oryza brachyantha OB01G30760 I 0.734
ORGLA01G0168300 Oryza glaberrima ORGLA01G0168300 I 0.699
ORGLA01G0233700 Oryza glaberrima ORGLA01G0233700 I 0.702
OGLUM01G32190 Oryza glumaepatula OGLUM01G32190 I 0.702
BGIOSGA004300 Oryza indica BGIOSGA004300 I 0.702
BGIOSGA003871 Oryza indica BGIOSGA003871 I 0.699
OLONG_011068 Oryza longistaminata OLONG_011068 I 0.699
OLONG_008666 Oryza longistaminata OLONG_008666 I 0.702
OMERI01G19510 Oryza meridionalis OMERI01G19510 I 0.699
OMERI05G07460 Oryza meridionalis OMERI05G07460 I 0.702
OMERI01G19490 Oryza meridionalis OMERI01G19490 I 0.699
ONIVA01G23780 Oryza nivara ONIVA01G23780 I 0.699
ONIVA01G32190 Oryza nivara ONIVA01G32190 I 0.702
OPUNC01G28080 Oryza punctata OPUNC01G28080 I 0.702
OPUNC01G21220 Oryza punctata OPUNC01G21220 I 0.699
ORUFI01G31370 Oryza rufipogon ORUFI01G31370 I 0.702
ORUFI01G23880 Oryza rufipogon ORUFI01G23880 I 0.699
OS01G0589300 Oryza sativa OS01G0589300 I 0.699
OS01G0708000 Oryza sativa OS01G0708000 D 0.702
OSTLU_27049 Ostreococcus lucimarinus OSTLU_27049 I 0.739
EuGene.1300010252 Ostreococcus RCC809 EuGene.1300010252 I 0.761
Pavir.J27218 Panicum virgatum Pavir.J27218 I 0.823
Pavir.Ea02064 Panicum virgatum Pavir.Ea02064 I 0.823
PDK_20s1467521g002 Phoenix dactylifera PDK_20s1467521g002 I 0.697
PDK_20s1413011g001 Phoenix dactylifera PDK_20s1413011g001 I 0.698
PDK_20s1888511g002 Phoenix dactylifera PDK_20s1888511g002 I 0.663
gw1.176.27.1 Physcomitrella patens gw1.176.27.1 I 0.779
gw1.1.287.1 Physcomitrella patens gw1.1.287.1 I 0.779
POPTR_0001s30000 Populus trichocarpa POPTR_0001s30000 I 0.697
POPTR_0007s14920 Populus trichocarpa POPTR_0007s14920 I 0.668
POPTR_0014s01010 Populus trichocarpa POPTR_0014s01010 I 0.668
POPTR_0009s09020 Populus trichocarpa POPTR_0009s09020 I 0.704
Pm021139 Prunus mume Pm021139 I 0.715
Pm002374 Prunus mume Pm002374 I 0.668
PRUPE_ppa011492mg Prunus persica PRUPE_ppa011492mg I 0.715
PRUPE_ppa009220mg Prunus persica PRUPE_ppa009220mg I 0.668
29661.m000926 Ricinus communis 29661.m000926 I 0.668
29706.m001328 Ricinus communis 29706.m001328 I 0.687
29812.m000204 Ricinus communis 29812.m000204 I 0.704
SapurV1A.0019s0460 Salix purpurea SapurV1A.0019s0460 I 0.704
SapurV1A.0005s0260 Salix purpurea SapurV1A.0005s0260 I 0.697
SapurV1A.1368s0050 Salix purpurea SapurV1A.1368s0050 I 0.668
SapurV1A.0235s0100 Salix purpurea SapurV1A.0235s0100 I 0.668
SELMODRAFT_413266 Selaginella moellendorffii SELMODRAFT_413266 I 0.706
SELMODRAFT_426759 Selaginella moellendorffii SELMODRAFT_426759 I 0.706
SELMODRAFT_443975 Selaginella moellendorffii SELMODRAFT_443975 I 0.682
SELMODRAFT_49296 Selaginella moellendorffii SELMODRAFT_49296 I 0.723
SELMODRAFT_49312 Selaginella moellendorffii SELMODRAFT_49312 I 0.682
SELMODRAFT_49297 Selaginella moellendorffii SELMODRAFT_49297 I 0.723
Si002403m.g Setaria italica Si002403m.g I 0.823
Solyc11g044320.1 Solanum lycopersicum Solyc11g044320.1 I 0.751
Solyc02g064630.2 Solanum lycopersicum Solyc02g064630.2 I 0.674
PGSC0003DMG402003328 Solanum tuberosum PGSC0003DMG402003328 I 0.674
PGSC0003DMG401025742 Solanum tuberosum PGSC0003DMG401025742 I 0.839
PGSC0003DMG400023131 Solanum tuberosum PGSC0003DMG400023131 I 0.751
Sb03g026470 Sorghum bicolor Sb03g026470 I 0.813
TCM_029078 Theobroma cacao TCM_029078 I 0.687
TCM_007242 Theobroma cacao TCM_007242 I 0.738
TCM_000807 Theobroma cacao TCM_000807 I 0.680
Traes_3AL_CF481F6AC Triticum aestivum Traes_3AL_CF481F6AC I 0.779
TRAES3BF118300070CFD_g Triticum aestivum TRAES3BF118300070CFD_g I 0.779
Traes_5AS_8756ECB5A Triticum aestivum Traes_5AS_8756ECB5A I 0.662
Traes_5BS_EB206B8BC Triticum aestivum Traes_5BS_EB206B8BC I 0.662
Traes_5DS_3EE830A43 Triticum aestivum Traes_5DS_3EE830A43 I 0.662
TRIUR3_10613 Triticum urartu TRIUR3_10613 I 0.662
TRIUR3_08672 Triticum urartu TRIUR3_08672 I 0.779
VIT_00s1311g00020 Vitis vinifera VIT_00s1311g00020 I 0.675
TRB1 Vitis vinifera VIT_03s0091g01030 I 0.738
VIT_07s0151g00480 Vitis vinifera VIT_07s0151g00480 I 0.675
GRMZM2G087817 Zea mays GRMZM2G087817 I 0.813
GRMZM2G136887 Zea mays GRMZM2G136887 I 0.813