CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Solyc03g119740.2
(
Solanum lycopersicum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Solyc03g119740.2
T280086_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT1G49010
M01269_2.00
Arabidopsis thaliana
NNYWATCNN
NNGATWRNN
PBM
Lambert et al.(2019)
pTH11535
0.756
0.826
AT1G49010
M07022_2.00
Arabidopsis thaliana
NHHWWYCTTATCYWH
DWRGATAAGRWWDDN
Dap-seq
OMalley et al.(2016)
At1g49010_col_a
0.756
0.826
AT1G49010
M07023_2.00
Arabidopsis thaliana
WWYCTTATCYWHWHH
DDWDWRGATAAGRWW
Dap-seq
OMalley et al.(2016)
At1g49010_colamp_a
0.756
0.826
PK19621.1
M01280_2.00
Cannabis sativa
NNTTATCYN
NRGATAANN
PBM
Lambert et al.(2019)
pTH10140
0.691
0.804
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc03g119740.2.1
Myb
137
182
PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYF
Links
Other
Myb/SANT
family TFs
Other
Solanum lycopersicum
TFs
31 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Thhalv10011650m.g
Eutrema salsugineum
Thhalv10011650m.g
I
0.767
Bostr.26675s0270
Boechera stricta
Bostr.26675s0270
I
0.758
AT1G49010
Arabidopsis thaliana
AT1G49010
D
0.756
scaffold_104540.1
Arabidopsis lyrata
scaffold_104540.1
I
0.752
TCM_012262
Theobroma cacao
TCM_012262
I
0.734
Gorai.006G063000
Gossypium raimondii
Gorai.006G063000
I
0.732
Carubv10009808m.g
Capsella rubella
Carubv10009808m.g
I
0.729
Cagra.1613s0002
Capsella grandiflora
Cagra.1613s0002
I
0.729
30174.m008717
Ricinus communis
30174.m008717
I
0.727
Ciclev10021342m.g
Citrus clementina
Ciclev10021342m.g
I
0.715
Eucgr.K02659
Eucalyptus grandis
Eucgr.K02659
I
0.714
Bra014169
Brassica rapa
Bra014169
I
0.710
Bo6g018000
Brassica oleracea
Bo6g018000
I
0.709
VIT_17s0000g04130
Vitis vinifera
VIT_17s0000g04130
I
0.705
Bra018772
Brassica rapa
Bra018772
I
0.702
PRUPE_ppa009092mg
Prunus persica
PRUPE_ppa009092mg
I
0.701
Pm030197
Prunus mume
Pm030197
I
0.701
Bo00685s060
Brassica oleracea
Bo00685s060
I
0.698
SapurV1A.0583s0020
Salix purpurea
SapurV1A.0583s0020
I
0.693
PK19621.1
Cannabis sativa
PK19621.1
D
0.691
GLYMA05G07980
Glycine max
GLYMA05G07980
I
0.687
cassava2458.valid.m1
Manihot esculenta
cassava2458.valid.m1
N
0.685
Ca_06612
Cicer arietinum
Ca_06612
I
0.681
chr4.LjB15O07.50.nc
Lotus japonicus
chr4.LjB15O07.50.nc
I
0.680
POPTR_0012s05720
Populus trichocarpa
POPTR_0012s05720
I
0.680
MDP0000853568
Malus domestica
MDP0000853568
I
0.668
MTR_4g111975
Medicago truncatula
MTR_4g111975
I
0.667
GLYMA17G13010
Glycine max
GLYMA17G13010
I
0.667
gene26214-v1.0-hybrid
Fragaria vesca
gene26214-v1.0-hybrid
I
0.666
Cucsa.198920
Cucumis sativus
Cucsa.198920
I
0.665
mgf017230m
Mimulus guttatus
mgf017230m
N
0.663