Solyc07g040920.2 (Solanum lycopersicum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Solyc07g040920.2 T280186_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS01G0708000
M02326_2.00 		Oryza sativa
WRMCCTAVNN
NNBTAGGKYW		 PBM
Weirauch et al.(2014)
pTH8716 		0.778 0.851
PK06103.1
M02348_2.00 		Cannabis sativa
TGCCCTAG
CTAGGGCA		 PBM
Weirauch et al.(2014)
pTH9649 		0.760 0.766
AT1G72740
M07033_2.00 		Arabidopsis thaliana
HMNAAACCCTAAWYY
RRWTTAGGGTTTNKD		 Dap-seq
OMalley et al.(2016)
AT1G72740_col_a 		0.716 0.809
AT1G72740
M07034_2.00 		Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN
NNNDNNNDRDTTAGGGTTWND		 Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a 		0.716 0.809
estExt_fgenesh1_pg.C_Chr_13.00010057
M02366_2.00 		Ostreococcus tauri
NRMCCTANN
NNTAGGKYN		 PBM
Weirauch et al.(2014)
pTH9424 		0.692 0.702
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc07g040920.2.1 Myb 5 57

Links

Other Myb/SANT family TFs
Other Solanum lycopersicum TFs

195 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Ea02570 Panicum virgatum Pavir.Ea02570 I 0.867
LPERR01G24270 Leersia perrieri LPERR01G24270 I 0.867
BRADI2G47820 Brachypodium distachyon BRADI2G47820 I 0.867
Traes_3AL_12B53AB09 Triticum aestivum Traes_3AL_12B53AB09 I 0.867
TRAES3BF075800120CFD_g Triticum aestivum TRAES3BF075800120CFD_g I 0.867
Sb03g032530 Sorghum bicolor Sb03g032530 I 0.849
GRMZM2G108424 Zea mays GRMZM2G108424 I 0.849
Pavir.Eb02802 Panicum virgatum Pavir.Eb02802 I 0.849
LjSGA_029815.1 Lotus japonicus LjSGA_029815.1 I 0.841
chr2.LjT13P17.300.nd Lotus japonicus chr2.LjT13P17.300.nd I 0.841
Si002467m.g Setaria italica Si002467m.g I 0.833
chr3.LjT02L14.30.nd Lotus japonicus chr3.LjT02L14.30.nd I 0.832
LjSGA_016825.2 Lotus japonicus LjSGA_016825.2 I 0.832
gene07496-v1.0-hybrid Fragaria vesca gene07496-v1.0-hybrid I 0.828
PDK_20s1888511g002 Phoenix dactylifera PDK_20s1888511g002 I 0.815
GSMUA_Achr4G08670_001 Musa acuminata GSMUA_Achr4G08670_001 I 0.815
GSMUA_Achr8G24960_001 Musa acuminata GSMUA_Achr8G24960_001 I 0.815
GSMUA_Achr4G09130_001 Musa acuminata GSMUA_Achr4G09130_001 I 0.815
MDP0000234807 Malus domestica MDP0000234807 I 0.812
MTR_2g099610 Medicago truncatula MTR_2g099610 I 0.811
GRMZM2G023667 Zea mays GRMZM2G023667 I 0.810
Thhalv10018950m.g Eutrema salsugineum Thhalv10018950m.g I 0.805
Eucgr.J02841 Eucalyptus grandis Eucgr.J02841 I 0.797
VIT_00s1311g00020 Vitis vinifera VIT_00s1311g00020 I 0.794
VIT_07s0151g00480 Vitis vinifera VIT_07s0151g00480 I 0.794
SapurV1A.0108s0150 Salix purpurea SapurV1A.0108s0150 I 0.792
POPTR_0006s14940 Populus trichocarpa POPTR_0006s14940 I 0.792
SapurV1A.0087s0150 Salix purpurea SapurV1A.0087s0150 I 0.792
AMTR_s00036p00166880 Amborella trichopoda AMTR_s00036p00166880 I 0.790
Ca_02722 Cicer arietinum Ca_02722 I 0.790
cassava43824.valid.m1 Manihot esculenta cassava43824.valid.m1 I 0.787
Pm027209 Prunus mume Pm027209 I 0.784
gene12682-v1.0-hybrid Fragaria vesca gene12682-v1.0-hybrid I 0.784
PRUPE_ppa007796mg Prunus persica PRUPE_ppa007796mg I 0.784
Ca_10058 Cicer arietinum Ca_10058 I 0.782
PK00568.1 Cannabis sativa PK00568.1 I 0.781
OBART01G28260 Oryza barthii OBART01G28260 I 0.778
OPUNC01G28080 Oryza punctata OPUNC01G28080 I 0.778
ONIVA01G32190 Oryza nivara ONIVA01G32190 I 0.778
OGLUM01G32190 Oryza glumaepatula OGLUM01G32190 I 0.778
OMERI05G07460 Oryza meridionalis OMERI05G07460 I 0.778
OB01G37330 Oryza brachyantha OB01G37330 I 0.778
ORGLA01G0233700 Oryza glaberrima ORGLA01G0233700 I 0.778
OLONG_008666 Oryza longistaminata OLONG_008666 I 0.778
BGIOSGA004300 Oryza indica BGIOSGA004300 I 0.778
OS01G0708000 Oryza sativa OS01G0708000 D 0.778
ORUFI01G31370 Oryza rufipogon ORUFI01G31370 I 0.778
Cla006547 Citrullus lanatus Cla006547 I 0.774
Cucsa.298390 Cucumis sativus Cucsa.298390 I 0.774
VIT_11s0016g01890 Vitis vinifera VIT_11s0016g01890 I 0.773
POPTR_0018s07040 Populus trichocarpa POPTR_0018s07040 I 0.771
GLYMA01G40220 Glycine max GLYMA01G40220 I 0.760
GLYMA17G17370 Glycine max GLYMA17G17370 I 0.760
PRUPE_ppa009220mg Prunus persica PRUPE_ppa009220mg I 0.760
GLYMA05G22500 Glycine max GLYMA05G22500 I 0.760
Pm002374 Prunus mume Pm002374 I 0.760
Cucsa.103240 Cucumis sativus Cucsa.103240 I 0.760
Cla014248 Citrullus lanatus Cla014248 I 0.760
MTR_4g097130 Medicago truncatula MTR_4g097130 I 0.760
GLYMA11G05070 Glycine max GLYMA11G05070 I 0.760
PK06103.1 Cannabis sativa PK06103.1 D 0.760
LjT25P15.150.nd Lotus japonicus LjT25P15.150.nd I 0.760
Ca_09355 Cicer arietinum Ca_09355 I 0.760
Ca_02232 Cicer arietinum Ca_02232 I 0.760
MDP0000239354 Malus domestica MDP0000239354 I 0.760
Ciclev10009173m.g Citrus clementina Ciclev10009173m.g I 0.758
Eucgr.C00865 Eucalyptus grandis Eucgr.C00865 I 0.758
orange1.1g024128m.g Citrus sinensis orange1.1g024128m.g I 0.758
SELMODRAFT_443975 Selaginella moellendorffii SELMODRAFT_443975 I 0.757
SELMODRAFT_49312 Selaginella moellendorffii SELMODRAFT_49312 I 0.757
GSMUA_Achr6G30000_001 Musa acuminata GSMUA_Achr6G30000_001 I 0.753
Pm021139 Prunus mume Pm021139 I 0.751
PRUPE_ppa011492mg Prunus persica PRUPE_ppa011492mg I 0.751
MDP0000265359 Malus domestica MDP0000265359 I 0.750
gene05764-v1.0-hybrid Fragaria vesca gene05764-v1.0-hybrid I 0.750
29912.m005376 Ricinus communis 29912.m005376 I 0.750
Bra030992 Brassica rapa Bra030992 I 0.750
Eucgr.H02312 Eucalyptus grandis Eucgr.H02312 I 0.750
AT1G17520 Arabidopsis thaliana AT1G17520 I 0.749
scaffold_101953.1 Arabidopsis lyrata scaffold_101953.1 I 0.749
GSMUA_Achr6G31260_001 Musa acuminata GSMUA_Achr6G31260_001 I 0.747
MTR_1g041765 Medicago truncatula MTR_1g041765 I 0.747
gene25445-v1.0-hybrid Fragaria vesca gene25445-v1.0-hybrid I 0.747
PDK_20s1413011g001 Phoenix dactylifera PDK_20s1413011g001 I 0.746
TRB1 Vitis vinifera VIT_03s0091g01030 I 0.740
orange1.1g022048m.g Citrus sinensis orange1.1g022048m.g I 0.740
SapurV1A.0019s0460 Salix purpurea SapurV1A.0019s0460 I 0.740
Gorai.005G230800 Gossypium raimondii Gorai.005G230800 I 0.740
POPTR_0001s30000 Populus trichocarpa POPTR_0001s30000 I 0.740
Eucgr.I01053 Eucalyptus grandis Eucgr.I01053 I 0.740
Ciclev10028926m.g Citrus clementina Ciclev10028926m.g I 0.740
PDK_20s1467521g002 Phoenix dactylifera PDK_20s1467521g002 I 0.740
TCM_007242 Theobroma cacao TCM_007242 I 0.740
POPTR_0009s09020 Populus trichocarpa POPTR_0009s09020 I 0.740
29812.m000204 Ricinus communis 29812.m000204 I 0.740
Lus10033775.g Linum usitatissimum Lus10033775.g I 0.740
cassava19326.valid.m1 Manihot esculenta cassava19326.valid.m1 I 0.740
Lus10014653.g Linum usitatissimum Lus10014653.g I 0.740
SapurV1A.0005s0260 Salix purpurea SapurV1A.0005s0260 I 0.740
PK19870.1 Cannabis sativa PK19870.1 I 0.740
BRADI4G01770 Brachypodium distachyon BRADI4G01770 I 0.738
Cagra.0824s0121 Capsella grandiflora Cagra.0824s0121 I 0.738
TRIUR3_10613 Triticum urartu TRIUR3_10613 I 0.738
Traes_5AS_8756ECB5A Triticum aestivum Traes_5AS_8756ECB5A I 0.738
Bo8g104830 Brassica oleracea Bo8g104830 I 0.738
Bra016598 Brassica rapa Bra016598 I 0.738
MLOC_10278 Hordeum vulgare MLOC_10278 I 0.738
Bo8g067280 Brassica oleracea Bo8g067280 I 0.738
Traes_5BS_EB206B8BC Triticum aestivum Traes_5BS_EB206B8BC I 0.738
Traes_5DS_3EE830A43 Triticum aestivum Traes_5DS_3EE830A43 I 0.738
Thhalv10012087m.g Eutrema salsugineum Thhalv10012087m.g I 0.737
SELMODRAFT_426759 Selaginella moellendorffii SELMODRAFT_426759 I 0.735
SELMODRAFT_413266 Selaginella moellendorffii SELMODRAFT_413266 I 0.735
Thhalv10011866m.g Eutrema salsugineum Thhalv10011866m.g I 0.734
EuGene.0500010080 Micromonas sp RCC299 EuGene.0500010080 I 0.734
Lus10027621.g Linum usitatissimum Lus10027621.g I 0.728
Aquca_060_00026 Aquilegia coerulea Aquca_060_00026 I 0.725
Bra016037 Brassica rapa Bra016037 I 0.722
Bo6g116150 Brassica oleracea Bo6g116150 I 0.722
Aquca_001_00028 Aquilegia coerulea Aquca_001_00028 I 0.721
Bra025967 Brassica rapa Bra025967 I 0.720
Bo5g023860 Brassica oleracea Bo5g023860 I 0.720
MTR_5g015340 Medicago truncatula MTR_5g015340 I 0.720
Lus10030935.g Linum usitatissimum Lus10030935.g I 0.717
Lus10040111.g Linum usitatissimum Lus10040111.g I 0.717
Cagra.1013s0027 Capsella grandiflora Cagra.1013s0027 I 0.716
fgenesh2_kg.2__1540__AT1G72740.1 Arabidopsis lyrata fgenesh2_kg.2__1540__AT1G72740.1 I 0.716
AT1G72740 Arabidopsis thaliana AT1G72740 D 0.716
Carubv10020636m.g Capsella rubella Carubv10020636m.g I 0.716
mgf007122m Mimulus guttatus mgf007122m I 0.715
Gorai.009G143000 Gossypium raimondii Gorai.009G143000 I 0.708
Cucsa.341020 Cucumis sativus Cucsa.341020 I 0.706
Cla012798 Citrullus lanatus Cla012798 I 0.706
POPTR_0007s14920 Populus trichocarpa POPTR_0007s14920 I 0.705
MTR_8g092810 Medicago truncatula MTR_8g092810 I 0.704
Solyc02g064630.2 Solanum lycopersicum Solyc02g064630.2 I 0.703
PGSC0003DMG402003328 Solanum tuberosum PGSC0003DMG402003328 I 0.703
mgf000125m Mimulus guttatus mgf000125m I 0.702
mgf010975m Mimulus guttatus mgf010975m I 0.702
ORGLA12G0159400 Oryza glaberrima ORGLA12G0159400 I 0.699
OLONG_008332 Oryza longistaminata OLONG_008332 I 0.699
ORUFI12G20880 Oryza rufipogon ORUFI12G20880 I 0.699
OS12G0613300 Oryza sativa OS12G0613300 I 0.699
BGIOSGA035841 Oryza indica BGIOSGA035841 I 0.699
OPUNC12G16890 Oryza punctata OPUNC12G16890 I 0.699
OBART12G18680 Oryza barthii OBART12G18680 I 0.699
ONIVA12G17630 Oryza nivara ONIVA12G17630 I 0.699
OB12G25520 Oryza brachyantha OB12G25520 I 0.699
OGLUM12G20330 Oryza glumaepatula OGLUM12G20330 I 0.699
Thhalv10008387m.g Eutrema salsugineum Thhalv10008387m.g I 0.698
orange1.1g023740m.g Citrus sinensis orange1.1g023740m.g I 0.698
Carubv10009890m.g Capsella rubella Carubv10009890m.g I 0.698
Ciclev10026245m.g Citrus clementina Ciclev10026245m.g I 0.698
Bra029978 Brassica rapa Bra029978 I 0.696
Bo1g081300 Brassica oleracea Bo1g081300 I 0.696
MTR_0095s0040 Medicago truncatula MTR_0095s0040 I 0.692
MTR_8g494240 Medicago truncatula MTR_8g494240 I 0.692
estExt_fgenesh1_pg.C_Chr_13.00010057 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_13.00010057 D 0.692
Ca_08043 Cicer arietinum Ca_08043 I 0.692
29706.m001328 Ricinus communis 29706.m001328 I 0.690
TCM_029078 Theobroma cacao TCM_029078 I 0.690
cassava34930.m1 Manihot esculenta cassava34930.m1 I 0.690
evm.TU.supercontig_106.31 Carica papaya evm.TU.supercontig_106.31 I 0.690
Bostr.7128s0363 Boechera stricta Bostr.7128s0363 I 0.689
Aquca_004_00181 Aquilegia coerulea Aquca_004_00181 I 0.685
GLYMA08G20270 Glycine max GLYMA08G20270 I 0.684
GLYMA07G00930 Glycine max GLYMA07G00930 I 0.684
Gorai.003G030800 Gossypium raimondii Gorai.003G030800 I 0.682
orange1.1g020653m.g Citrus sinensis orange1.1g020653m.g I 0.682
TCM_000807 Theobroma cacao TCM_000807 I 0.682
Ciclev10026089m.g Citrus clementina Ciclev10026089m.g I 0.682
Gorai.007G224200 Gossypium raimondii Gorai.007G224200 I 0.682
PRUPE_ppa016498mg Prunus persica PRUPE_ppa016498mg I 0.681
Pm013309 Prunus mume Pm013309 I 0.681
mgf004823m Mimulus guttatus mgf004823m I 0.681
Bostr.10273s0077 Boechera stricta Bostr.10273s0077 I 0.677
OMERI12G14000 Oryza meridionalis OMERI12G14000 I 0.677
cassava7508.valid.m1 Manihot esculenta cassava7508.valid.m1 I 0.671
29661.m000926 Ricinus communis 29661.m000926 I 0.671
cassava37744.valid.m1 Manihot esculenta cassava37744.valid.m1 I 0.671
OSTLU_27049 Ostreococcus lucimarinus OSTLU_27049 I 0.666
Bo3g184590 Brassica oleracea Bo3g184590 I 0.664
Bra030894 Brassica rapa Bra030894 I 0.664
PGSC0003DMG400023131 Solanum tuberosum PGSC0003DMG400023131 I 0.663
Solyc11g044320.1 Solanum lycopersicum Solyc11g044320.1 I 0.663
TRB3 Arabidopsis lyrata fgenesh2_kg.5__1337__AT3G49850.1 I 0.662
Cagra.4491s0006 Capsella grandiflora Cagra.4491s0006 I 0.662
Carubv10026874m.g Capsella rubella Carubv10026874m.g I 0.662
Carubv10017722m.g Capsella rubella Carubv10017722m.g I 0.662
Cagra.0342s0046 Capsella grandiflora Cagra.0342s0046 I 0.662
Bostr.0568s0184 Boechera stricta Bostr.0568s0184 I 0.662
Thhalv10004691m.g Eutrema salsugineum Thhalv10004691m.g I 0.662
PGSC0003DMG401025742 Solanum tuberosum PGSC0003DMG401025742 I 0.662
Thhalv10010562m.g Eutrema salsugineum Thhalv10010562m.g I 0.662
Bostr.6864s0256 Boechera stricta Bostr.6864s0256 I 0.662