Solyc07g054960.1 (Solanum lycopersicum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Solyc07g054960.1 T280194_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB58
M07005_2.00 		Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN		 Dap-seq
OMalley et al.(2016)
MYB58_col_a 		0.682 0.699
MYB58
M07006_2.00 		Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND		 Dap-seq
OMalley et al.(2016)
MYB58_colamp_a 		0.682 0.699
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc07g054960.1.1 Myb 14 61
Solyc07g054960.1.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Solanum lycopersicum TFs

44 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400046667 Solanum tuberosum PGSC0003DMG400046667 N 0.833
PGSC0003DMG400047175 Solanum tuberosum PGSC0003DMG400047175 N 0.797
POPTR_0019s14130 Populus trichocarpa POPTR_0019s14130 N 0.731
Gorai.008G151100 Gossypium raimondii Gorai.008G151100 I 0.724
cassava14699.m1 Manihot esculenta cassava14699.m1 I 0.708
SapurV1A.0417s0140 Salix purpurea SapurV1A.0417s0140 N 0.703
TCM_007868 Theobroma cacao TCM_007868 I 0.695
GLYMA13G37903 Glycine max GLYMA13G37903 I 0.684
Bo8g105490 Brassica oleracea Bo8g105490 I 0.682
Carubv10011190m.g Capsella rubella Carubv10011190m.g I 0.682
Cagra.0824s0021 Capsella grandiflora Cagra.0824s0021 I 0.682
Bostr.7128s0256 Boechera stricta Bostr.7128s0256 I 0.682
MYB58 Arabidopsis thaliana AT1G16490 D 0.682
Thhalv10008436m.g Eutrema salsugineum Thhalv10008436m.g I 0.682
Bra026720 Brassica rapa Bra026720 I 0.682
ATMYB58 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001492 I 0.682
Bra014929 Brassica rapa Bra014929 I 0.680
SapurV1A.0417s0150 Salix purpurea SapurV1A.0417s0150 I 0.680
Bo3g081700 Brassica oleracea Bo3g081700 I 0.680
Bra001907 Brassica rapa Bra001907 I 0.680
MYB15 Arabidopsis lyrata fgenesh2_kg.3__2539__AT3G23250.1 I 0.680
Cagra.2181s0015 Capsella grandiflora Cagra.2181s0015 I 0.680
Carubv10015750m.g Capsella rubella Carubv10015750m.g I 0.680
Bo7g040780 Brassica oleracea Bo7g040780 I 0.680
Thhalv10022110m.g Eutrema salsugineum Thhalv10022110m.g I 0.680
Bostr.19424s0318 Boechera stricta Bostr.19424s0318 I 0.680
Ca_12130 Cicer arietinum Ca_12130 I 0.678
Bo6g122640 Brassica oleracea Bo6g122640 I 0.677
MDP0000148689 Malus domestica MDP0000148689 N 0.675
Gorai.013G072900 Gossypium raimondii Gorai.013G072900 I 0.674
Gorai.013G071600 Gossypium raimondii Gorai.013G071600 I 0.674
ATMYB63 Arabidopsis thaliana AT1G79180 D 0.668
Carubv10020691m.g Capsella rubella Carubv10020691m.g I 0.668
Bostr.20129s0353 Boechera stricta Bostr.20129s0353 I 0.668
ATMYB63 Arabidopsis lyrata fgenesh2_kg.2__2216__AT1G79180.1 I 0.668
Cagra.1361s0065 Capsella grandiflora Cagra.1361s0065 I 0.668
mgf019234m Mimulus guttatus mgf019234m N 0.667
POPTR_0019s14120 Populus trichocarpa POPTR_0019s14120 I 0.666
orange1.1g042846m.g Citrus sinensis orange1.1g042846m.g I 0.666
Bo6g081140 Brassica oleracea Bo6g081140 I 0.664
Bra003619 Brassica rapa Bra003619 I 0.664
mgf022141m Mimulus guttatus mgf022141m N 0.662
GLYMA08G17861 Glycine max GLYMA08G17861 I 0.661
GLYMA15G41255 Glycine max GLYMA15G41255 I 0.661