Solyc11g072060.1 (Solanum lycopersicum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Solyc11g072060.1 T280288_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATMYB65
M01076_2.00 		Arabidopsis thaliana
HAACNRHHN
NDDYNGTTD		 PBM
Sullivan et al.(2014)
pTH7084 		0.714 0.710
ATMYB65
M07076_2.00 		Arabidopsis thaliana
DHHNTAACBGHMW
WKDCVGTTANDDH		 Dap-seq
OMalley et al.(2016)
MYB65_col200_a 		0.714 0.710
ATMYB65
M07077_2.00 		Arabidopsis thaliana
NTAACYGHMWHNDHN
NDHNDWKDCRGTTAN		 Dap-seq
OMalley et al.(2016)
MYB65_colamp_a 		0.714 0.710
Gam1
M02703_2.00 		Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN		 SELEX
Mathelier et al.(2014)
MA0034.1 		0.687 0.699
Gam1
M11061_2.00 		Hordeum vulgare
YAACSRHM
KDYSGTTR		 Transfac
Matys et al.(2006)
P$GAMYB_01 		0.687 0.699
GAM1_ORYSI
M11055_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GAMYB_Q2 		0.687 0.699
MYB33
M02306_2.00 		Arabidopsis thaliana
HAACNRHHNN
NNDDYNGTTD		 PBM
Weirauch et al.(2014)
pTH8204 		0.680 0.699
MYB33
M07120_2.00 		Arabidopsis thaliana
NTAACYGWHWH
DWDWCRGTTAN		 Dap-seq
OMalley et al.(2016)
MYB33_col_a 		0.680 0.699
Q9FR42_TOBAC
M11076_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBAS1_01 		0.675 0.688
myb.Ph3
M02704_2.00 		Petunia x hybrida
WAACNGTYW
WRACNGTTW		 SELEX
Mathelier et al.(2014)
MA0054.1 		0.663 0.688
myb.Ph3
M11070_2.00 		Petunia x hybrida
RTAACSGTTTYHW
WDRAAACSGTTAY		 Transfac
Matys et al.(2006)
P$MYBPH3_01 		0.663 0.688
myb.Ph3
M11071_2.00 		Petunia x hybrida
STAACTAACTHHH
DDDAGTTAGTTAS		 Transfac
Matys et al.(2006)
P$MYBPH3_02 		0.663 0.688
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc11g072060.1.1 Myb 95 142
Solyc11g072060.1.1 Myb 148 193

Links

Other Myb/SANT family TFs
Other Solanum lycopersicum TFs

150 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PGSC0003DMG400027418 Solanum tuberosum PGSC0003DMG400027418 I 0.818
ATMYB120 Arabidopsis thaliana AT5G55020 I 0.738
Bostr.26833s0761 Boechera stricta Bostr.26833s0761 I 0.738
Cagra.1629s0073 Capsella grandiflora Cagra.1629s0073 I 0.738
Thhalv10013018m.g Eutrema salsugineum Thhalv10013018m.g I 0.738
Carubv10026070m.g Capsella rubella Carubv10026070m.g I 0.738
Bra002938 Brassica rapa Bra002938 I 0.738
Bo9g119060 Brassica oleracea Bo9g119060 I 0.732
Ca_20081 Cicer arietinum Ca_20081 I 0.724
Bo3g021790 Brassica oleracea Bo3g021790 I 0.718
Bra028997 Brassica rapa Bra028997 I 0.718
Bostr.19424s1075 Boechera stricta Bostr.19424s1075 I 0.714
Ciclev10010620m.g Citrus clementina Ciclev10010620m.g I 0.714
Cagra.1655s0026 Capsella grandiflora Cagra.1655s0026 I 0.714
Carubv10013393m.g Capsella rubella Carubv10013393m.g I 0.714
ATMYB65 Arabidopsis thaliana AT3G11440 D 0.714
ATMYB65 Arabidopsis lyrata fgenesh2_kg.3__1182__AT3G11440.1 I 0.714
orange1.1g046419m.g Citrus sinensis orange1.1g046419m.g I 0.714
MTR_3g052430 Medicago truncatula MTR_3g052430 I 0.711
Thhalv10020455m.g Eutrema salsugineum Thhalv10020455m.g I 0.709
29686.m000890 Ricinus communis 29686.m000890 I 0.708
POPTR_0001s07330 Populus trichocarpa POPTR_0001s07330 I 0.708
cassava1461.valid.m1 Manihot esculenta cassava1461.valid.m1 I 0.708
Gorai.010G212500 Gossypium raimondii Gorai.010G212500 I 0.708
SapurV1A.0369s0230 Salix purpurea SapurV1A.0369s0230 I 0.708
SapurV1A.0537s0200 Salix purpurea SapurV1A.0537s0200 I 0.708
Lus10026142.g Linum usitatissimum Lus10026142.g I 0.708
Lus10008685.g Linum usitatissimum Lus10008685.g I 0.708
Gorai.009G301100 Gossypium raimondii Gorai.009G301100 I 0.708
evm.TU.supercontig_33.151 Carica papaya evm.TU.supercontig_33.151 I 0.708
TCM_044611 Theobroma cacao TCM_044611 I 0.708
GLYMA08G42955 Glycine max GLYMA08G42955 I 0.708
PK15478.1 Cannabis sativa PK15478.1 I 0.706
Bra034842 Brassica rapa Bra034842 I 0.705
Bo5g136570 Brassica oleracea Bo5g136570 I 0.705
GLYMA08G42920 Glycine max GLYMA08G42920 I 0.704
MYB33 Arabidopsis lyrata fgenesh2_kg.6__546__AT5G06100.3 I 0.700
mgf002965m Mimulus guttatus mgf002965m I 0.700
Carubv10000715m.g Capsella rubella Carubv10000715m.g I 0.699
Bostr.13129s0364 Boechera stricta Bostr.13129s0364 I 0.699
PGSC0003DMG400013897 Solanum tuberosum PGSC0003DMG400013897 I 0.699
GLYMA18G10921 Glycine max GLYMA18G10921 I 0.699
Thhalv10013329m.g Eutrema salsugineum Thhalv10013329m.g I 0.699
LjT02G13.10.nc Lotus japonicus LjT02G13.10.nc I 0.699
Cagra.2117s0052 Capsella grandiflora Cagra.2117s0052 I 0.699
Bo1g141040 Brassica oleracea Bo1g141040 I 0.697
Bra002042 Brassica rapa Bra002042 I 0.697
Thhalv10025350m.g Eutrema salsugineum Thhalv10025350m.g I 0.696
GSMUA_Achr1G17150_001 Musa acuminata GSMUA_Achr1G17150_001 I 0.696
GSMUA_Achr4G23690_001 Musa acuminata GSMUA_Achr4G23690_001 I 0.695
MYB97 Arabidopsis lyrata fgenesh2_kg.7__1539__AT4G26930.1 I 0.694
MYB97 Arabidopsis thaliana AT4G26930 I 0.694
POPTR_0003s18900 Populus trichocarpa POPTR_0003s18900 I 0.691
Lus10036103.g Linum usitatissimum Lus10036103.g I 0.691
Lus10026787.g Linum usitatissimum Lus10026787.g I 0.691
cassava40302.m1 Manihot esculenta cassava40302.m1 I 0.689
OMERI01G31990 Oryza meridionalis OMERI01G31990 I 0.687
Si000907m.g Setaria italica Si000907m.g I 0.687
OLONG_020610 Oryza longistaminata OLONG_020610 I 0.687
OGLUM01G20920 Oryza glumaepatula OGLUM01G20920 I 0.687
GAM1 Oryza indica BGIOSGA004670 I 0.687
BRADI2G53010 Brachypodium distachyon BRADI2G53010 I 0.687
TRAES3BF027700010CFD_g Triticum aestivum TRAES3BF027700010CFD_g I 0.687
Ciclev10000756m.g Citrus clementina Ciclev10000756m.g I 0.687
F775_28392 Aegilops tauschii F775_28392 I 0.687
TRIUR3_27104 Triticum urartu TRIUR3_27104 I 0.687
Pavir.Ea03206 Panicum virgatum Pavir.Ea03206 I 0.687
orange1.1g011938m.g Citrus sinensis orange1.1g011938m.g I 0.687
GAM1_ORYSI Oryza sativa GAM1_ORYSI D 0.687
GRMZM2G139688 Zea mays GRMZM2G139688 I 0.687
GAMYB Oryza sativa OS01G0812000 I 0.687
OB01G43550 Oryza brachyantha OB01G43550 I 0.687
Gam1 Hordeum vulgare Q96464_HORVU D 0.687
OBART01G34660 Oryza barthii OBART01G34660 I 0.687
Cla005406 Citrullus lanatus Cla005406 I 0.686
Cucsa.060080 Cucumis sativus Cucsa.060080 I 0.686
Eucgr.G03183 Eucalyptus grandis Eucgr.G03183 I 0.685
Pm016605 Prunus mume Pm016605 I 0.685
GLYMA12G31950 Glycine max GLYMA12G31950 I 0.685
gene00431-v1.0-hybrid Fragaria vesca gene00431-v1.0-hybrid I 0.685
PRUPE_ppa003628mg Prunus persica PRUPE_ppa003628mg I 0.685
cassava44767.m1 Manihot esculenta cassava44767.m1 I 0.684
SELMODRAFT_81112 Selaginella moellendorffii SELMODRAFT_81112 I 0.682
MTR_3g052450 Medicago truncatula MTR_3g052450 I 0.682
Gorai.012G022000 Gossypium raimondii Gorai.012G022000 I 0.682
SELMODRAFT_128781 Selaginella moellendorffii SELMODRAFT_128781 I 0.682
VIT_13s0067g01630 Vitis vinifera VIT_13s0067g01630 I 0.682
PRUPE_ppa022465mg Prunus persica PRUPE_ppa022465mg I 0.681
gene03321-v1.0-hybrid Fragaria vesca gene03321-v1.0-hybrid I 0.681
chr3.CM0005.370.nc Lotus japonicus chr3.CM0005.370.nc I 0.680
MYB33 Arabidopsis thaliana AT5G06100 D 0.680
Solyc01g009070.2 Solanum lycopersicum Solyc01g009070.2 I 0.679
PGSC0003DMG400022689 Solanum tuberosum PGSC0003DMG400022689 I 0.679
GLYMA13G25716 Glycine max GLYMA13G25716 I 0.678
GSMUA_AchrUn_randomG15100_001 Musa acuminata GSMUA_AchrUn_randomG15100_001 I 0.676
MDP0000175835 Malus domestica MDP0000175835 I 0.676
MDP0000176798 Malus domestica MDP0000176798 I 0.676
MDP0000147309 Malus domestica MDP0000147309 I 0.676
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I 0.676
evm.TU.supercontig_34.210 Carica papaya evm.TU.supercontig_34.210 I 0.676
Ca_25013 Cicer arietinum Ca_25013 I 0.676
MDP0000151688 Malus domestica MDP0000151688 I 0.676
Q9FR42_TOBAC Nicotiana tabacum Q9FR42_TOBAC D 0.675
MLOC_6041 Hordeum vulgare MLOC_6041 I 0.675
SELMODRAFT_117411 Selaginella moellendorffii SELMODRAFT_117411 I 0.673
SELMODRAFT_84369 Selaginella moellendorffii SELMODRAFT_84369 I 0.673
Cucsa.364400 Cucumis sativus Cucsa.364400 I 0.673
mgf010934m Mimulus guttatus mgf010934m I 0.673
Cla013880 Citrullus lanatus Cla013880 I 0.673
mgf019173m Mimulus guttatus mgf019173m I 0.673
Solyc06g073640.2 Solanum lycopersicum Solyc06g073640.2 I 0.672
PGSC0003DMG400005918 Solanum tuberosum PGSC0003DMG400005918 I 0.672
PGSC0003DMG400028949 Solanum tuberosum PGSC0003DMG400028949 I 0.672
Solyc07g052300.2 Solanum lycopersicum Solyc07g052300.2 I 0.672
mgf025568m Mimulus guttatus mgf025568m I 0.672
TRIUR3_20797 Triticum urartu TRIUR3_20797 I 0.671
Bra035547 Brassica rapa Bra035547 I 0.671
evm.TU.supercontig_12.292 Carica papaya evm.TU.supercontig_12.292 I 0.671
MTR_8g042410 Medicago truncatula MTR_8g042410 I 0.671
F775_23034 Aegilops tauschii F775_23034 I 0.671
Ca_21739 Cicer arietinum Ca_21739 I 0.670
SapurV1A.1951s0020 Salix purpurea SapurV1A.1951s0020 I 0.670
mgf020500m Mimulus guttatus mgf020500m I 0.670
Sb03g037680 Sorghum bicolor Sb03g037680 I 0.670
GLYMA13G38521 Glycine max GLYMA13G38521 I 0.668
POPTR_0009s02380 Populus trichocarpa POPTR_0009s02380 I 0.667
cassava30977.valid.m1 Manihot esculenta cassava30977.valid.m1 I 0.667
Pm015094 Prunus mume Pm015094 I 0.667
PRUPE_ppa017451mg Prunus persica PRUPE_ppa017451mg I 0.667
29785.m000932 Ricinus communis 29785.m000932 I 0.667
MDP0000179306 Malus domestica MDP0000179306 I 0.666
gene03323-v1.0-hybrid Fragaria vesca gene03323-v1.0-hybrid I 0.666
Aquca_005_00025 Aquilegia coerulea Aquca_005_00025 I 0.666
AMTR_s00037p00177500 Amborella trichopoda AMTR_s00037p00177500 I 0.666
OMERI03G21920 Oryza meridionalis OMERI03G21920 I 0.664
OB03G32840 Oryza brachyantha OB03G32840 I 0.664
OLONG_025057 Oryza longistaminata OLONG_025057 I 0.664
OGLUM03G24880 Oryza glumaepatula OGLUM03G24880 I 0.664
ONIVA04G15310 Oryza nivara ONIVA04G15310 I 0.664
OBART03G24120 Oryza barthii OBART03G24120 I 0.664
OPUNC03G22220 Oryza punctata OPUNC03G22220 I 0.664
ORUFI03G24730 Oryza rufipogon ORUFI03G24730 I 0.664
ORGLA03G0224700 Oryza glaberrima ORGLA03G0224700 I 0.664
OS03G0578900 Oryza sativa OS03G0578900 I 0.664
myb.Ph3 Petunia x hybrida Q02994_PETHY D 0.663
AMTR_s00038p00150140 Amborella trichopoda AMTR_s00038p00150140 I 0.662
Cla007782 Citrullus lanatus Cla007782 I 0.661
Ca_15422 Cicer arietinum Ca_15422 I 0.661
MYB101 Vitis vinifera VIT_12s0059g00700 I 0.661
Cucsa.148580 Cucumis sativus Cucsa.148580 I 0.661