CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc12g005640.1
(
Solanum lycopersicum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Solyc12g005640.1
T280291_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc12g005640.1.1
Myb
15
62
KGTWTLEEDKKLAAYVNKYGCWNWRQLPKFAGLSRCGKSCRLRWLNYL
Solyc12g005640.1.1
Myb
68
113
RGNYTREEDQIIMKLHAEIGNKWSAIAIHLPGRSDNEIKNHWHTSL
Links
Other
Myb/SANT
family TFs
Other
Solanum lycopersicum
TFs
73 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PGSC0003DMG400013752
Solanum tuberosum
PGSC0003DMG400013752
N
0.909
Solyc07g054980.1
Solanum lycopersicum
Solyc07g054980.1
I
0.757
PGSC0003DMG400026176
Solanum tuberosum
PGSC0003DMG400026176
N
0.751
gene01998-v1.0-hybrid
Fragaria vesca
gene01998-v1.0-hybrid
N
0.743
Solyc07g053230.2
Solanum lycopersicum
Solyc07g053230.2
I
0.739
Lus10039734.g
Linum usitatissimum
Lus10039734.g
I
0.739
Lus10039735.g
Linum usitatissimum
Lus10039735.g
I
0.738
PGSC0003DMG401026177
Solanum tuberosum
PGSC0003DMG401026177
I
0.735
chr3.LjT47O18.40.nc
Lotus japonicus
chr3.LjT47O18.40.nc
N
0.732
PGSC0003DMG402026177
Solanum tuberosum
PGSC0003DMG402026177
I
0.730
MDP0000407613
Malus domestica
MDP0000407613
N
0.729
MDP0000155426
Malus domestica
MDP0000155426
I
0.729
Ciclev10016303m.g
Citrus clementina
Ciclev10016303m.g
I
0.728
Gorai.012G132400
Gossypium raimondii
Gorai.012G132400
I
0.726
Pm015302
Prunus mume
Pm015302
N
0.725
PRUPE_ppa026553mg
Prunus persica
PRUPE_ppa026553mg
N
0.725
Solyc07g053240.2
Solanum lycopersicum
Solyc07g053240.2
I
0.724
SapurV1A.0048s0160
Salix purpurea
SapurV1A.0048s0160
N
0.720
POPTR_0013s14560
Populus trichocarpa
POPTR_0013s14560
I
0.720
PK24260.1
Cannabis sativa
PK24260.1
N
0.719
GLYMA12G32541
Glycine max
GLYMA12G32541
N
0.717
chr3.LjT47O18.60.nc
Lotus japonicus
chr3.LjT47O18.60.nc
N
0.717
TCM_007865
Theobroma cacao
TCM_007865
I
0.715
cassava26894.m1
Manihot esculenta
cassava26894.m1
N
0.714
PGSC0003DMG400015087
Solanum tuberosum
PGSC0003DMG400015087
N
0.714
Solyc07g055000.1
Solanum lycopersicum
Solyc07g055000.1
N
0.713
Gorai.002G016800
Gossypium raimondii
Gorai.002G016800
I
0.713
MTR_0008s0390
Medicago truncatula
MTR_0008s0390
N
0.713
SapurV1A.0417s0150
Salix purpurea
SapurV1A.0417s0150
I
0.712
POPTR_0019s14120
Populus trichocarpa
POPTR_0019s14120
I
0.712
VIT_12s0134g00490
Vitis vinifera
VIT_12s0134g00490
I
0.712
Lus10033738.g
Linum usitatissimum
Lus10033738.g
N
0.711
MTR_0251s0050
Medicago truncatula
MTR_0251s0050
N
0.711
Lus10018547.g
Linum usitatissimum
Lus10018547.g
N
0.707
MTR_2g089450
Medicago truncatula
MTR_2g089450
N
0.705
GLYMA13G37903
Glycine max
GLYMA13G37903
I
0.705
orange1.1g024860m.g
Citrus sinensis
orange1.1g024860m.g
I
0.704
Ca_22597
Cicer arietinum
Ca_22597
N
0.703
VIT_12s0134g00480
Vitis vinifera
VIT_12s0134g00480
I
0.702
MTR_2g089420
Medicago truncatula
MTR_2g089420
N
0.702
GLYMA06G45547
Glycine max
GLYMA06G45547
N
0.702
Gorai.005G206800
Gossypium raimondii
Gorai.005G206800
N
0.698
GLYMA06G45531
Glycine max
GLYMA06G45531
N
0.694
Eucgr.A01767
Eucalyptus grandis
Eucgr.A01767
I
0.692
POPTR_0019s14140
Populus trichocarpa
POPTR_0019s14140
N
0.691
Lus10031607.g
Linum usitatissimum
Lus10031607.g
N
0.690
cassava14699.m1
Manihot esculenta
cassava14699.m1
I
0.687
GLYMA12G11330
Glycine max
GLYMA12G11330
I
0.684
SapurV1A.2051s0040
Salix purpurea
SapurV1A.2051s0040
I
0.684
GLYMA06G45554
Glycine max
GLYMA06G45554
I
0.684
SapurV1A.0048s0170
Salix purpurea
SapurV1A.0048s0170
I
0.684
Gorai.008G151100
Gossypium raimondii
Gorai.008G151100
I
0.683
evm.TU.supercontig_34.62
Carica papaya
evm.TU.supercontig_34.62
N
0.682
Eucgr.A01766
Eucalyptus grandis
Eucgr.A01766
I
0.680
SapurV1A.0417s0130
Salix purpurea
SapurV1A.0417s0130
I
0.678
Lus10039772.g
Linum usitatissimum
Lus10039772.g
N
0.677
MTR_0008s0470
Medicago truncatula
MTR_0008s0470
N
0.676
GSMUA_Achr4G28850_001
Musa acuminata
GSMUA_Achr4G28850_001
I
0.676
GLYMA12G11340
Glycine max
GLYMA12G11340
N
0.674
GLYMA06G45540
Glycine max
GLYMA06G45540
N
0.671
GLYMA01G06192
Glycine max
GLYMA01G06192
I
0.670
GLYMA02G12254
Glycine max
GLYMA02G12254
I
0.670
Lus10018545.g
Linum usitatissimum
Lus10018545.g
N
0.670
MTR_1g043050
Medicago truncatula
MTR_1g043050
I
0.669
GLYMA06G45520
Glycine max
GLYMA06G45520
N
0.667
GLYMA12G11490
Glycine max
GLYMA12G11490
N
0.667
orange1.1g042846m.g
Citrus sinensis
orange1.1g042846m.g
I
0.666
PGSC0003DMG400042926
Solanum tuberosum
PGSC0003DMG400042926
N
0.665
mgf011672m
Mimulus guttatus
mgf011672m
I
0.665
Solyc03g093930.2
Solanum lycopersicum
Solyc03g093930.2
N
0.665
Pm028882
Prunus mume
Pm028882
I
0.664
GLYMA12G11390
Glycine max
GLYMA12G11390
N
0.661
Solyc03g093890.2
Solanum lycopersicum
Solyc03g093890.2
N
0.661