Solyc12g049350.1 (Solanum lycopersicum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Solyc12g049350.1 T280311_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK06182.1
M02349_2.00
Cannabis sativa
WTACCTACCN

NGGTAGGTAW
PBM
Weirauch et al.(2014)
pTH9581
0.785 0.839
MYB111
M00882_2.00
Arabidopsis thaliana
NNNAMCDAMY

RKTHGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB111
0.753 0.828
MYB4
M02303_2.00
Arabidopsis thaliana
YACCWACY

RGTWGGTR
PBM
Weirauch et al.(2014)
pTH7075
0.661 0.731
MYB4
M07115_2.00
Arabidopsis thaliana
NYYACCWAMHWHNDD

HHNDWDKTWGGTRRN
Dap-seq
OMalley et al.(2016)
MYB4_col200_a
0.661 0.731
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc12g049350.1.1 Myb 14 61
Solyc12g049350.1.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Solanum lycopersicum TFs

175 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PGSC0003DMG400004371 Solanum tuberosum PGSC0003DMG400004371 I 0.879
Solyc06g009710.2 Solanum lycopersicum Solyc06g009710.2 I 0.849
PGSC0003DMG400007304 Solanum tuberosum PGSC0003DMG400007304 I 0.840
GSMUA_AchrUn_randomG12700_001 Musa acuminata GSMUA_AchrUn_randomG12700_001 I 0.794
GSMUA_Achr5G21250_001 Musa acuminata GSMUA_Achr5G21250_001 I 0.791
Gorai.001G143200 Gossypium raimondii Gorai.001G143200 I 0.790
PK06182.1 Cannabis sativa PK06182.1 D 0.785
MDP0000607330 Malus domestica MDP0000607330 I 0.782
MDP0000119725 Malus domestica MDP0000119725 I 0.782
GSMUA_Achr8G10470_001 Musa acuminata GSMUA_Achr8G10470_001 I 0.779
cassava24756.valid.m1 Manihot esculenta cassava24756.valid.m1 I 0.778
OPUNC03G13890 Oryza punctata OPUNC03G13890 I 0.775
LPERR03G12690 Leersia perrieri LPERR03G12690 I 0.775
TCM_004777 Theobroma cacao TCM_004777 I 0.773
Solyc01g079620.2 Solanum lycopersicum Solyc01g079620.2 I 0.771
POPTR_0002s19920 Populus trichocarpa POPTR_0002s19920 I 0.770
Cucsa.069500 Cucumis sativus Cucsa.069500 I 0.769
PGSC0003DMG400009033 Solanum tuberosum PGSC0003DMG400009033 I 0.767
POPTR_0014s11780 Populus trichocarpa POPTR_0014s11780 I 0.767
GRMZM2G084799 Zea mays GRMZM2G084799 I 0.766
GRMZM2G057027 Zea mays GRMZM2G057027 I 0.766
VIT_07s0005g01210 Vitis vinifera VIT_07s0005g01210 I 0.764
SapurV1A.0180s0510 Salix purpurea SapurV1A.0180s0510 I 0.764
Sb01g037670 Sorghum bicolor Sb01g037670 I 0.761
Cla017646 Citrullus lanatus Cla017646 I 0.755
gene02324-v1.0-hybrid Fragaria vesca gene02324-v1.0-hybrid I 0.755
Ciclev10020307m.g Citrus clementina Ciclev10020307m.g I 0.754
orange1.1g014829m.g Citrus sinensis orange1.1g014829m.g I 0.754
Thhalv10001498m.g Eutrema salsugineum Thhalv10001498m.g I 0.753
MYB111 Arabidopsis thaliana AT5G49330 D 0.753
MTR_7g109320 Medicago truncatula MTR_7g109320 I 0.752
TCM_021318 Theobroma cacao TCM_021318 I 0.752
Carubv10019345m.g Capsella rubella Carubv10019345m.g I 0.752
SapurV1A.0158s0390 Salix purpurea SapurV1A.0158s0390 I 0.752
Cagra.13170s0007 Capsella grandiflora Cagra.13170s0007 I 0.752
Pavir.Ib01420 Panicum virgatum Pavir.Ib01420 I 0.751
Cucsa.252700 Cucumis sativus Cucsa.252700 I 0.751
OMERI03G13130 Oryza meridionalis OMERI03G13130 I 0.751
OBART03G14380 Oryza barthii OBART03G14380 I 0.751
ORUFI03G15030 Oryza rufipogon ORUFI03G15030 I 0.751
ONIVA03G15280 Oryza nivara ONIVA03G15280 I 0.751
Si039538m.g Setaria italica Si039538m.g I 0.751
BGIOSGA010900 Oryza indica BGIOSGA010900 I 0.751
Cla009418 Citrullus lanatus Cla009418 I 0.748
chr5.CM0239.580.nc Lotus japonicus chr5.CM0239.580.nc I 0.748
Cla022107 Citrullus lanatus Cla022107 I 0.748
GLYMA03G37640 Glycine max GLYMA03G37640 I 0.747
SapurV1A.0050s0720 Salix purpurea SapurV1A.0050s0720 I 0.744
Aquca_003_00583 Aquilegia coerulea Aquca_003_00583 I 0.743
Ca_03498 Cicer arietinum Ca_03498 I 0.743
BRADI2G11676 Brachypodium distachyon BRADI2G11676 I 0.742
GRMZM2G022686 Zea mays GRMZM2G022686 I 0.742
Ciclev10005376m.g Citrus clementina Ciclev10005376m.g I 0.740
Si002107m.g Setaria italica Si002107m.g I 0.740
GRMZM2G051256 Zea mays GRMZM2G051256 I 0.740
Sb03g012550 Sorghum bicolor Sb03g012550 I 0.740
cassava40469.m1 Manihot esculenta cassava40469.m1 I 0.740
orange1.1g041081m.g Citrus sinensis orange1.1g041081m.g I 0.740
F775_11235 Aegilops tauschii F775_11235 I 0.739
TRIUR3_31689 Triticum urartu TRIUR3_31689 I 0.739
MLOC_57220 Hordeum vulgare MLOC_57220 I 0.739
Traes_4DL_967152326 Triticum aestivum Traes_4DL_967152326 I 0.739
Traes_4AS_3883DC244 Triticum aestivum Traes_4AS_3883DC244 I 0.739
GLYMA02G01740 Glycine max GLYMA02G01740 I 0.737
Thhalv10004518m.g Eutrema salsugineum Thhalv10004518m.g I 0.736
MYB111 Arabidopsis lyrata scaffold_801313.1 I 0.736
GRMZM2G051528 Zea mays GRMZM2G051528 I 0.735
POPTR_0010s15090 Populus trichocarpa POPTR_0010s15090 I 0.733
MYB12 Arabidopsis thaliana AT2G47460 I 0.729
Bo3g039690 Brassica oleracea Bo3g039690 I 0.729
MYB12 Arabidopsis lyrata fgenesh2_kg.4__2983__AT2G47460.1 I 0.729
Bostr.25993s0011 Boechera stricta Bostr.25993s0011 I 0.729
Bra000453 Brassica rapa Bra000453 I 0.729
Gorai.008G141000 Gossypium raimondii Gorai.008G141000 I 0.727
Eucgr.A00200 Eucalyptus grandis Eucgr.A00200 I 0.726
GLYMA17G03480 Glycine max GLYMA17G03480 I 0.725
PRUPE_ppa004560mg Prunus persica PRUPE_ppa004560mg I 0.725
evm.TU.supercontig_9.95 Carica papaya evm.TU.supercontig_9.95 I 0.725
evm.TU.supercontig_18.11 Carica papaya evm.TU.supercontig_18.11 I 0.725
Pavir.J00442 Panicum virgatum Pavir.J00442 I 0.725
MTR_4g121460 Medicago truncatula MTR_4g121460 I 0.725
BGIOSGA003345 Oryza indica BGIOSGA003345 I 0.724
OGLUM01G14390 Oryza glumaepatula OGLUM01G14390 I 0.724
OS01G0305900 Oryza sativa OS01G0305900 I 0.724
ORUFI01G13920 Oryza rufipogon ORUFI01G13920 I 0.724
BRADI1G64687 Brachypodium distachyon BRADI1G64687 I 0.723
Thhalv10006080m.g Eutrema salsugineum Thhalv10006080m.g I 0.722
ATMYB11 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5002710 I 0.722
gene05167-v1.0-hybrid Fragaria vesca gene05167-v1.0-hybrid I 0.721
TCM_021317 Theobroma cacao TCM_021317 I 0.720
Bostr.15774s0064 Boechera stricta Bostr.15774s0064 I 0.720
GLYMA07G37142 Glycine max GLYMA07G37142 I 0.719
GLYMA09G04370 Glycine max GLYMA09G04370 I 0.719
GLYMA15G15400 Glycine max GLYMA15G15400 I 0.719
Bostr.13158s0261 Boechera stricta Bostr.13158s0261 I 0.718
PK16958.1 Cannabis sativa PK16958.1 I 0.718
PRUPE_ppa007594mg Prunus persica PRUPE_ppa007594mg I 0.717
Gorai.011G195100 Gossypium raimondii Gorai.011G195100 I 0.716
MTR_2g034790 Medicago truncatula MTR_2g034790 I 0.716
PDK_20s1388491g004 Phoenix dactylifera PDK_20s1388491g004 I 0.713
Cagra.6296s0007 Capsella grandiflora Cagra.6296s0007 I 0.712
Carubv10026694m.g Capsella rubella Carubv10026694m.g I 0.712
Bra036145 Brassica rapa Bra036145 I 0.712
Bo7g092680 Brassica oleracea Bo7g092680 I 0.712
Bra037419 Brassica rapa Bra037419 I 0.712
Traes_1DS_711044AD5 Triticum aestivum Traes_1DS_711044AD5 I 0.710
Gorai.007G124000 Gossypium raimondii Gorai.007G124000 I 0.709
mgf012733m Mimulus guttatus mgf012733m I 0.708
Lus10002435.g Linum usitatissimum Lus10002435.g I 0.707
mgf003233m Mimulus guttatus mgf003233m I 0.707
Lus10036336.g Linum usitatissimum Lus10036336.g I 0.706
OB01G22640 Oryza brachyantha OB01G22640 I 0.705
Pm008294 Prunus mume Pm008294 I 0.705
ORGLA03G0138900 Oryza glaberrima ORGLA03G0138900 I 0.703
OB03G24320 Oryza brachyantha OB03G24320 I 0.703
OGLUM03G14490 Oryza glumaepatula OGLUM03G14490 I 0.703
Bo4g004500 Brassica oleracea Bo4g004500 I 0.696
Aquca_028_00141 Aquilegia coerulea Aquca_028_00141 I 0.696
mgf024278m Mimulus guttatus mgf024278m I 0.692
Pavir.J00444 Panicum virgatum Pavir.J00444 I 0.691
Pavir.Ca00231 Panicum virgatum Pavir.Ca00231 I 0.691
TCM_037555 Theobroma cacao TCM_037555 I 0.690
GLYMA19G40250 Glycine max GLYMA19G40250 I 0.688
TRIUR3_05136 Triticum urartu TRIUR3_05136 I 0.688
MYB8 Arabidopsis thaliana AT1G35515 I 0.687
GLYMA10G01801 Glycine max GLYMA10G01801 I 0.687
GRMZM2G160838 Zea mays GRMZM2G160838 I 0.686
Lus10010273.g Linum usitatissimum Lus10010273.g I 0.684
Carubv10024801m.g Capsella rubella Carubv10024801m.g I 0.684
Eucgr.H01058 Eucalyptus grandis Eucgr.H01058 I 0.682
Lus10001458.g Linum usitatissimum Lus10001458.g I 0.680
SELMODRAFT_450007 Selaginella moellendorffii SELMODRAFT_450007 I 0.679
SELMODRAFT_120788 Selaginella moellendorffii SELMODRAFT_120788 I 0.679
F775_21522 Aegilops tauschii F775_21522 I 0.679
VIT_05s0077g01360 Vitis vinifera VIT_05s0077g01360 I 0.678
MYB11 Arabidopsis thaliana AT3G62610 I 0.678
OBART01G11800 Oryza barthii OBART01G11800 I 0.676
ORGLA01G0099200 Oryza glaberrima ORGLA01G0099200 I 0.676
ONIVA01G15380 Oryza nivara ONIVA01G15380 I 0.676
PGSC0003DMG401023433 Solanum tuberosum PGSC0003DMG401023433 I 0.674
F775_18434 Aegilops tauschii F775_18434 I 0.674
Bo3g044210 Brassica oleracea Bo3g044210 I 0.670
Pm020104 Prunus mume Pm020104 I 0.670
Bra000680 Brassica rapa Bra000680 I 0.670
Gorai.004G130900 Gossypium raimondii Gorai.004G130900 I 0.669
GRMZM2G084583 Zea mays GRMZM2G084583 I 0.669
HOS10 Arabidopsis lyrata fgenesh2_kg.1__3635__AT1G35515.1 I 0.667
Eucgr.C00722 Eucalyptus grandis Eucgr.C00722 I 0.667
Carubv10012451m.g Capsella rubella Carubv10012451m.g I 0.666
cassava24925.valid.m1 Manihot esculenta cassava24925.valid.m1 I 0.665
Bra010736 Brassica rapa Bra010736 I 0.664
Cucsa.096800 Cucumis sativus Cucsa.096800 I 0.663
Aquca_073_00013 Aquilegia coerulea Aquca_073_00013 I 0.663
Cagra.9781s0007 Capsella grandiflora Cagra.9781s0007 I 0.663
Sb03g041360 Sorghum bicolor Sb03g041360 I 0.663
evm.TU.supercontig_96.57 Carica papaya evm.TU.supercontig_96.57 I 0.662
Eucgr.G02195 Eucalyptus grandis Eucgr.G02195 I 0.662
cassava29110.valid.m1 Manihot esculenta cassava29110.valid.m1 I 0.662
POPTR_0004s14510 Populus trichocarpa POPTR_0004s14510 I 0.661
ATMYB4 Arabidopsis lyrata fgenesh2_kg.7__59__AT4G38620.1 I 0.661
ORGLA08G0216900 Oryza glaberrima ORGLA08G0216900 I 0.661
ORUFI08G25300 Oryza rufipogon ORUFI08G25300 I 0.661
MYB4 Arabidopsis thaliana AT4G38620 D 0.661
OB08G29560 Oryza brachyantha OB08G29560 I 0.661
Thhalv10025886m.g Eutrema salsugineum Thhalv10025886m.g I 0.661
BGIOSGA026525 Oryza indica BGIOSGA026525 I 0.661
Bostr.25542s0045 Boechera stricta Bostr.25542s0045 I 0.661
Bo7g119670 Brassica oleracea Bo7g119670 I 0.661
Eucgr.I01406 Eucalyptus grandis Eucgr.I01406 I 0.661
Cucsa.234310 Cucumis sativus Cucsa.234310 I 0.661
MDP0000157940 Malus domestica MDP0000157940 I 0.661
Cla020592 Citrullus lanatus Cla020592 I 0.661
Bra033572 Brassica rapa Bra033572 I 0.661
BGIOSGA026527 Oryza indica BGIOSGA026527 I 0.661
Solyc10g055410.1 Solanum lycopersicum Solyc10g055410.1 I 0.661