CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc12g099140.1
(
Solanum lycopersicum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
Solyc12g099140.1
T280320_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB108
M07065_2.00
Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY
Dap-seq
OMalley et al.(2016)
BOS1_col_a
0.781
0.892
MYB62
M07027_2.00
Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN
Dap-seq
OMalley et al.(2016)
MYB62_col_a
0.728
0.806
MYB62
M07028_2.00
Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND
Dap-seq
OMalley et al.(2016)
MYB62_colamp_a
0.728
0.806
MYB116
M07014_2.00
Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN
Dap-seq
OMalley et al.(2016)
MYB116_col_a
0.692
0.763
MYB116
M07015_2.00
Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND
Dap-seq
OMalley et al.(2016)
MYB116_colamp_a
0.692
0.763
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc12g099140.1.1
Myb
37
84
RGSWTVEEDFTLMNHIALHGEGRWNSLARSAGLKRTGKSCRLRWLNYL
Solyc12g099140.1.1
Myb
90
135
RGNITLEEQLLILQLHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRV
Links
Other
Myb/SANT
family TFs
Other
Solanum lycopersicum
TFs
418 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy