TCM_021936 (Theobroma cacao)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 TCM_021936 T280549_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB3R5
M07116_2.00 		Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN		 Dap-seq
OMalley et al.(2016)
MYB3R5_col_a 		0.774 0.886
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.685 0.779
Q948S6_TOBAC
M11075_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA1_01 		0.680 0.750
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.668 0.764
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.662 0.736
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.662 0.736
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY07524 Myb 59 105
EOY07524 Myb 111 157
EOY07524 Myb 163 208
EOY07525 Myb 59 105
EOY07525 Myb 111 157
EOY07525 Myb 163 208
EOY07526 Myb 21 67
EOY07526 Myb 73 119
EOY07526 Myb 125 170

Links

Other Myb/SANT family TFs
Other Theobroma cacao TFs

128 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I 0.889
Pm002704 Prunus mume Pm002704 I 0.889
evm.TU.supercontig_228.17 Carica papaya evm.TU.supercontig_228.17 I 0.876
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I 0.869
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.860
Gorai.001G249400 Gossypium raimondii Gorai.001G249400 I 0.858
29846.m000184 Ricinus communis 29846.m000184 I 0.856
Ciclev10011452m.g Citrus clementina Ciclev10011452m.g I 0.854
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I 0.854
Eucgr.K03133 Eucalyptus grandis Eucgr.K03133 I 0.850
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I 0.850
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I 0.848
GLYMA07G15820 Glycine max GLYMA07G15820 I 0.842
mgf019610m Mimulus guttatus mgf019610m I 0.840
MDP0000219581 Malus domestica MDP0000219581 I 0.838
MTR_7g061330 Medicago truncatula MTR_7g061330 I 0.830
MTR_7g461410 Medicago truncatula MTR_7g461410 I 0.830
cassava12645.valid.m1 Manihot esculenta cassava12645.valid.m1 I 0.829
Lus10025351.g Linum usitatissimum Lus10025351.g I 0.828
Lus10024394.g Linum usitatissimum Lus10024394.g I 0.828
VIT_08s0007g00360 Vitis vinifera VIT_08s0007g00360 I 0.828
GLYMA18G39740 Glycine max GLYMA18G39740 I 0.826
BRADI2G54640 Brachypodium distachyon BRADI2G54640 I 0.821
GSMUA_Achr10G26610_001 Musa acuminata GSMUA_Achr10G26610_001 I 0.816
Cucsa.175460 Cucumis sativus Cucsa.175460 I 0.815
Thhalv10020579m.g Eutrema salsugineum Thhalv10020579m.g I 0.814
Cagra.0487s0012 Capsella grandiflora Cagra.0487s0012 I 0.812
Carubv10000643m.g Capsella rubella Carubv10000643m.g I 0.812
fgenesh1_pg.C_scaffold_3000839 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000839 I 0.812
Bostr.22252s0130 Boechera stricta Bostr.22252s0130 I 0.810
Thhalv10013211m.g Eutrema salsugineum Thhalv10013211m.g I 0.809
Bo1g144510 Brassica oleracea Bo1g144510 I 0.806
Bra034067 Brassica rapa Bra034067 I 0.806
LPERR01G31650 Leersia perrieri LPERR01G31650 I 0.804
Cagra.2515s0028 Capsella grandiflora Cagra.2515s0028 I 0.802
Carubv10013377m.g Capsella rubella Carubv10013377m.g I 0.802
Aquca_003_00045 Aquilegia coerulea Aquca_003_00045 I 0.800
PK11664.1 Cannabis sativa PK11664.1 I 0.799
TRAES3BF104600030CFD_g Triticum aestivum TRAES3BF104600030CFD_g I 0.796
Traes_3AL_386795528 Triticum aestivum Traes_3AL_386795528 I 0.796
Traes_3DL_6BBC889A1 Triticum aestivum Traes_3DL_6BBC889A1 I 0.796
MYB3R-3 Arabidopsis thaliana AT3G09370 I 0.795
Cla018173 Citrullus lanatus Cla018173 I 0.793
Bostr.6251s0040 Boechera stricta Bostr.6251s0040 I 0.792
MYB3R-2 Oryza sativa OS01G0841500 I 0.786
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.786
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.786
gene18416-v1.0-hybrid Fragaria vesca gene18416-v1.0-hybrid I 0.777
MYB3R5 Arabidopsis thaliana AT5G02320 D 0.774
ATMYB3R5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000124 I 0.774
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.773
Solyc09g010820.2 Solanum lycopersicum Solyc09g010820.2 I 0.771
PGSC0003DMG400008908 Solanum tuberosum PGSC0003DMG400008908 I 0.771
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.771
GRMZM2G081919 Zea mays GRMZM2G081919 I 0.768
Si000842m.g Setaria italica Si000842m.g I 0.759
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.759
Bo5g139340 Brassica oleracea Bo5g139340 I 0.751
Bra029762 Brassica rapa Bra029762 I 0.750
GSMUA_Achr6G05030_001 Musa acuminata GSMUA_Achr6G05030_001 I 0.748
Bra009597 Brassica rapa Bra009597 I 0.740
GSMUA_Achr7G10520_001 Musa acuminata GSMUA_Achr7G10520_001 I 0.739
Bo9g184660 Brassica oleracea Bo9g184660 I 0.731
OLONG_011208 Oryza longistaminata OLONG_011208 I 0.720
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.718
AMTR_s00012p00208260 Amborella trichopoda AMTR_s00012p00208260 I 0.715
GLYMA03G19470 Glycine max GLYMA03G19470 I 0.715
Traes_1BL_C25B5DDB4 Triticum aestivum Traes_1BL_C25B5DDB4 I 0.714
Ca_21127 Cicer arietinum Ca_21127 I 0.713
TRIUR3_29290 Triticum urartu TRIUR3_29290 I 0.708
OB01G45570 Oryza brachyantha OB01G45570 I 0.705
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.703
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.703
Ca_14925 Cicer arietinum Ca_14925 I 0.700
Traes_1DL_B26A733D4 Triticum aestivum Traes_1DL_B26A733D4 I 0.700
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.696
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.693
Bo3g062020 Brassica oleracea Bo3g062020 N 0.692
Cla023357 Citrullus lanatus Cla023357 I 0.690
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.690
OPUNC05G16800 Oryza punctata OPUNC05G16800 I 0.689
PK12011.1 Cannabis sativa PK12011.1 D 0.685
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.685
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.684
MDP0000179225 Malus domestica MDP0000179225 I 0.684
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.682
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.681
TCM_047091 Theobroma cacao TCM_047091 I 0.681
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.681
mgf008601m Mimulus guttatus mgf008601m I 0.680
Q948S6_TOBAC Nicotiana tabacum Q948S6_TOBAC D 0.680
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.679
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.679
Cla022565 Citrullus lanatus Cla022565 I 0.679
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.679
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.678
AMTR_s00109p00061950 Amborella trichopoda AMTR_s00109p00061950 I 0.678
Si021484m.g Setaria italica Si021484m.g I 0.678
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.677
PDK_20s1314361g001 Phoenix dactylifera PDK_20s1314361g001 N 0.676
Solyc11g071300.1 Solanum lycopersicum Solyc11g071300.1 I 0.676
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.675
Bo1g010040 Brassica oleracea Bo1g010040 I 0.675
BGIOSGA017917 Oryza indica BGIOSGA017917 I 0.674
ORUFI05G20390 Oryza rufipogon ORUFI05G20390 I 0.674
OBART05G19200 Oryza barthii OBART05G19200 I 0.674
ONIVA05G20060 Oryza nivara ONIVA05G20060 I 0.674
Bra011376 Brassica rapa Bra011376 I 0.670
GLYMA17G26240 Glycine max GLYMA17G26240 I 0.669
Bra001311 Brassica rapa Bra001311 N 0.669
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.668
29794.m003447 Ricinus communis 29794.m003447 I 0.668
PGSC0003DMG400018588 Solanum tuberosum PGSC0003DMG400018588 I 0.668
Ca_01884 Cicer arietinum Ca_01884 I 0.667
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.666
MDP0000295807 Malus domestica MDP0000295807 I 0.665
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.665
TRIUR3_33469 Triticum urartu TRIUR3_33469 N 0.662
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.662
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.662
F775_12121 Aegilops tauschii F775_12121 N 0.662
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.662
Bra034531 Brassica rapa Bra034531 I 0.661
GSMUA_Achr2G19890_001 Musa acuminata GSMUA_Achr2G19890_001 I 0.661
GSMUA_Achr10G14840_001 Musa acuminata GSMUA_Achr10G14840_001 I 0.661
Traes_1BS_403DBC53C Triticum aestivum Traes_1BS_403DBC53C I 0.661
Bo3g171130 Brassica oleracea Bo3g171130 I 0.661