CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCM_021936
(
Theobroma cacao
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
TCM_021936
T280549_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB3R5
M07116_2.00
Arabidopsis thaliana
NWWWWNTDRCCGTTR
YAACGGYHANWWWWN
Dap-seq
OMalley et al.(2016)
MYB3R5_col_a
0.774
0.886
PK12011.1
M01279_2.00
Cannabis sativa
HAACGGHHNN
NNDDCCGTTD
PBM
Lambert et al.(2019)
pTH11423
0.685
0.779
Q948S6_TOBAC
M11075_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBA1_01
0.680
0.750
Q948S5_TOBAC
M11074_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBA2_01
0.668
0.764
PC-MYB1
M07110_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R1_col_a
0.662
0.736
PC-MYB1
M07111_2.00
Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH
Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a
0.662
0.736
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOY07524
Myb
59
105
KGGWTPEEDETLRNAVAAFKGKSWKKIAEFFPDRSEVQCLHRWQKVL
EOY07524
Myb
111
157
KGPWTQEEDDKIIELVSRYGPTKWSVIAKSLPGRIGKQCRERWHNHL
EOY07524
Myb
163
208
KDAWILEEELALMNAHRIYGNKWAEIAKVLPGRTDNAIKNHWNSSL
EOY07525
Myb
59
105
KGGWTPEEDETLRNAVAAFKGKSWKKIAEFFPDRSEVQCLHRWQKVL
EOY07525
Myb
111
157
KGPWTQEEDDKIIELVSRYGPTKWSVIAKSLPGRIGKQCRERWHNHL
EOY07525
Myb
163
208
KDAWILEEELALMNAHRIYGNKWAEIAKVLPGRTDNAIKNHWNSSL
EOY07526
Myb
21
67
KGGWTPEEDETLRNAVAAFKGKSWKKIAEFFPDRSEVQCLHRWQKVL
EOY07526
Myb
73
119
KGPWTQEEDDKIIELVSRYGPTKWSVIAKSLPGRIGKQCRERWHNHL
EOY07526
Myb
125
170
KDAWILEEELALMNAHRIYGNKWAEIAKVLPGRTDNAIKNHWNSSL
Links
Other
Myb/SANT
family TFs
Other
Theobroma cacao
TFs
128 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy