TCM_030480 (Theobroma cacao)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 TCM_030480 T280588_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PHL7
M02292_2.00
Arabidopsis thaliana
NWGATDCBNN

NNVGHATCWN
PBM
Weirauch et al.(2014)
pTH7253
0.909 1.000
PK10342.1
M02351_2.00
Cannabis sativa
WAGATKCS

SGMATCTW
PBM
Weirauch et al.(2014)
pTH9489
0.909 1.000
PHL7
M07040_2.00
Arabidopsis thaliana
DRNAKATTCBNHNNN

NNNDNVGAATMTNYH
Dap-seq
OMalley et al.(2016)
At2g01060_colamp_a
0.909 1.000
PHL7
M07041_2.00
Arabidopsis thaliana
VGAATATTCBNHH

DDNVGAATATTCB
Dap-seq
OMalley et al.(2016)
At2g01060_col
0.909 1.000
Q5IWM2_WHEAT
M11059_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB80_01
0.802 0.872
AT3G24120
M00729_2.00
Arabidopsis thaliana
NNKATDCBNN

NNVGHATMNN
PBM
Chang et al.(2013)
pTH7086
0.772 0.809
UNE16
M01270_2.00
Arabidopsis thaliana
NWKATTCBNN

NNVGAATMWN
PBM
Lambert et al.(2019)
pTH9967
0.772 0.809
AT3G24120
M07085_2.00
Arabidopsis thaliana
HAKATTCB

VGAATMTD
Dap-seq
OMalley et al.(2016)
At3g24120_col_a
0.772 0.809
AT3G24120
M07086_2.00
Arabidopsis thaliana
NDRAAKATTCBHHN

NDDVGAATMTTYHN
Dap-seq
OMalley et al.(2016)
At3g24120_colamp_a
0.772 0.809
MYR1
M02309_2.00
Arabidopsis thaliana
NKATNCBNNN

NNNVGNATMN
PBM
Weirauch et al.(2014)
pTH8859
0.743 0.745
MYR2
M02294_2.00
Arabidopsis thaliana
NKATDCBNN

NNVGHATMN
PBM
Weirauch et al.(2014)
pTH7097
0.737 0.723
MYR2
M07063_2.00
Arabidopsis thaliana
NNDAAKATTCYHHN

NDDRGAATMTTHNN
Dap-seq
OMalley et al.(2016)
At3g04030_col_a
0.737 0.723
MYR2
M07064_2.00
Arabidopsis thaliana
VRAAKATTCBHWNNN

NNNWDVGAATMTTYB
Dap-seq
OMalley et al.(2016)
At3g04030_colamp_a
0.737 0.723
PHL1
M02310_2.00
Arabidopsis thaliana
NWKATNCBNN

NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7122
0.735 0.766
PHL1
M07132_2.00
Arabidopsis thaliana
MDRGAATATTCBNWN

NWNVGAATATTCYHK
Dap-seq
OMalley et al.(2016)
At5g29000_col_a
0.735 0.766
PHL12
M01077_2.00
Arabidopsis thaliana
NWKATTCBNN

NNVGAATMWN
PBM
Sullivan et al.(2014)
pTH7098
0.730 0.809
PHL12
M07079_2.00
Arabidopsis thaliana
RGAATATTCYYTWN

NWARRGAATATTCY
Dap-seq
OMalley et al.(2016)
At3g12730_col_a
0.730 0.809
PHL12
M07080_2.00
Arabidopsis thaliana
NNRAAKATTCBHHN

NDDVGAATMTTYNN
Dap-seq
OMalley et al.(2016)
At3g12730_colamp_a
0.730 0.809
AT2G20400
M07046_2.00
Arabidopsis thaliana
NDNNDNHNNVDDDNNNHAWRGMATATTCB

VGAATATKCYWTDNNNHHHBNNDNHNNHN
Dap-seq
OMalley et al.(2016)
AT2G20400_col_a
0.704 0.809
AT2G20400
M07047_2.00
Arabidopsis thaliana
RDRGAATATTCBNWD

HWNVGAATATTCYHY
Dap-seq
OMalley et al.(2016)
AT2G20400_colamp_a
0.704 0.809
PHL6
M02295_2.00
Arabidopsis thaliana
NNWKATNCBN

NVGNATMWNN
PBM
Weirauch et al.(2014)
pTH7071
0.690 0.745
PHL6
M07083_2.00
Arabidopsis thaliana
NDGAAAACH

DGTTTTCHN
Dap-seq
OMalley et al.(2016)
At3g13040_col_b
0.690 0.745
PHL11
M07134_2.00
Arabidopsis thaliana
NNRAAKATTCYHHN

NDDRGAATMTTYNN
Dap-seq
OMalley et al.(2016)
AT5G45580_col_a
0.688 0.787
PHL11
M07135_2.00
Arabidopsis thaliana
NRAAKATTCYHHNN

NNDDRGAATMTTYN
Dap-seq
OMalley et al.(2016)
AT5G45580_colamp_a
0.688 0.787
PHR1
M02302_2.00
Arabidopsis thaliana
NWKATNCBNN

NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7249
0.685 0.787
PHR1
M02329_2.00
Oryza sativa
NWKATNCBNN

NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7755
0.685 0.787
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY29060 Myb 110 161

Links

Other Myb/SANT family TFs
Other Theobroma cacao TFs

950 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30169.m006340 Ricinus communis 30169.m006340 I 0.000
AC214648.3_FG005 Zea mays AC214648.3_FG005 I 0.000
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.000
Bo3g040220 Brassica oleracea Bo3g040220 N 0.000
Bo5g008590 Brassica oleracea Bo5g008590 N 0.000
Bra018675 Brassica rapa Bra018675 N 0.000
Bra031599 Brassica rapa Bra031599 N 0.000
Bra035698 Brassica rapa Bra035698 N 0.000
Carubv10010390m.g Capsella rubella Carubv10010390m.g N 0.000
cassava11218.m1 Manihot esculenta cassava11218.m1 I 0.000
cassava16668.m1 Manihot esculenta cassava16668.m1 N 0.000
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.000
cassava40961.m1 Manihot esculenta cassava40961.m1 I 0.000
cassava44959.m1 Manihot esculenta cassava44959.m1 N 0.000
cassava819.valid.m1 Manihot esculenta cassava819.valid.m1 I 0.000
Ca_02507 Cicer arietinum Ca_02507 N 0.000
Ca_04287 Cicer arietinum Ca_04287 I 0.000
chr3.CM0246.260.nc Lotus japonicus chr3.CM0246.260.nc N 0.000
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.000
Ciclev10032782m.g Citrus clementina Ciclev10032782m.g N 0.000
Cla000556 Citrullus lanatus Cla000556 I 0.000
Cla005133 Citrullus lanatus Cla005133 N 0.000
Cla013678 Citrullus lanatus Cla013678 I 0.000
Cucsa.052720 Cucumis sativus Cucsa.052720 I 0.000
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.000
Cucsa.166030 Cucumis sativus Cucsa.166030 N 0.000
Cucsa.207400 Cucumis sativus Cucsa.207400 N 0.000
F775_02335 Aegilops tauschii F775_02335 N 0.000
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.000
gene23226-v1.0-hybrid Fragaria vesca gene23226-v1.0-hybrid N 0.000
GLYMA11G15810 Glycine max GLYMA11G15810 N 0.000
GLYMA12G07650 Glycine max GLYMA12G07650 I 0.000
GLYMA15G05030 Glycine max GLYMA15G05030 I 0.000
GLYMA20G02850 Glycine max GLYMA20G02850 I 0.000
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.000
Gorai.004G012800 Gossypium raimondii Gorai.004G012800 I 0.000
Gorai.006G120900 Gossypium raimondii Gorai.006G120900 I 0.000
Gorai.012G094200 Gossypium raimondii Gorai.012G094200 N 0.000
Gorai.012G185900 Gossypium raimondii Gorai.012G185900 N 0.000
GSMUA_Achr3G17800_001 Musa acuminata GSMUA_Achr3G17800_001 N 0.000
LBD11 Arabidopsis thaliana AT2G28500 N 0.000
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.000
Lus10011645.g Linum usitatissimum Lus10011645.g I 0.000
Lus10036130.g Linum usitatissimum Lus10036130.g I 0.000
Lus10040373.g Linum usitatissimum Lus10040373.g I 0.000
MDP0000121203 Malus domestica MDP0000121203 I 0.000
MDP0000123013 Malus domestica MDP0000123013 I 0.000
MDP0000151784 Malus domestica MDP0000151784 I 0.000
MDP0000268890 Malus domestica MDP0000268890 I 0.000
MDP0000284409 Malus domestica MDP0000284409 I 0.000
MDP0000822986 Malus domestica MDP0000822986 I 0.000
MDP0000879799 Malus domestica MDP0000879799 N 0.000
mgf015666m Mimulus guttatus mgf015666m N 0.000
mgf026046m Mimulus guttatus mgf026046m I 0.000
MTR_1g095850 Medicago truncatula MTR_1g095850 I 0.000
MTR_4g060950 Medicago truncatula MTR_4g060950 I 0.000
OB03G23270 Oryza brachyantha OB03G23270 N 0.000
OB05G11740 Oryza brachyantha OB05G11740 I 0.000
OBART05G01640 Oryza barthii OBART05G01640 N 0.000
OPUNC05G01610 Oryza punctata OPUNC05G01610 N 0.000
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.000
Pavir.Ib01336 Panicum virgatum Pavir.Ib01336 N 0.000
PGSC0003DMG400004138 Solanum tuberosum PGSC0003DMG400004138 N 0.000
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.000
PGSC0003DMG400025400 Solanum tuberosum PGSC0003DMG400025400 I 0.000
PK11564.1 Cannabis sativa PK11564.1 I 0.000
Pm011040 Prunus mume Pm011040 I 0.000
Pm018585 Prunus mume Pm018585 I 0.000
POPTR_0008s04350 Populus trichocarpa POPTR_0008s04350 I 0.000
POPTR_0010s22470 Populus trichocarpa POPTR_0010s22470 I 0.000
PRUPE_ppa011528mg Prunus persica PRUPE_ppa011528mg I 0.000
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.000
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.000
PRUPE_ppa023989mg Prunus persica PRUPE_ppa023989mg I 0.000
SapurV1A.0023s0430 Salix purpurea SapurV1A.0023s0430 I 0.000
SapurV1A.0038s0110 Salix purpurea SapurV1A.0038s0110 I 0.000
Sb09g002190 Sorghum bicolor Sb09g002190 I 0.000
Solyc04g050010.1 Solanum lycopersicum Solyc04g050010.1 N 0.000
Solyc05g048740.2 Solanum lycopersicum Solyc05g048740.2 I 0.000
Solyc06g005090.2 Solanum lycopersicum Solyc06g005090.2 I 0.000
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.000
TCM_043081 Theobroma cacao TCM_043081 I 0.000
Thhalv10008781m.g Eutrema salsugineum Thhalv10008781m.g N 0.000
Thhalv10017165m.g Eutrema salsugineum Thhalv10017165m.g N 0.000
Traes_4AS_669BAF6C7 Triticum aestivum Traes_4AS_669BAF6C7 N 0.000
VIT_06s0004g03330 Vitis vinifera VIT_06s0004g03330 I 0.000
VIT_06s0004g03350 Vitis vinifera VIT_06s0004g03350 I 0.000
VIT_13s0019g03700 Vitis vinifera VIT_13s0019g03700 I 0.000
VIT_13s0019g03720 Vitis vinifera VIT_13s0019g03720 N 0.000
VIT_13s0019g03780 Vitis vinifera VIT_13s0019g03780 N 0.000
VIT_13s0019g03800 Vitis vinifera VIT_13s0019g03800 N 0.000
VIT_13s0019g03820 Vitis vinifera VIT_13s0019g03820 N 0.000
VIT_13s0019g03830 Vitis vinifera VIT_13s0019g03830 N 0.000
VIT_13s0019g03840 Vitis vinifera VIT_13s0019g03840 N 0.000