TCM_042744 (Theobroma cacao)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 TCM_042744 T280646_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT1G72740
M07033_2.00
Arabidopsis thaliana
HMNAAACCCTAAWYY

RRWTTAGGGTTTNKD
Dap-seq
OMalley et al.(2016)
AT1G72740_col_a
0.721 0.766
AT1G72740
M07034_2.00
Arabidopsis thaliana
HNWAACCCTAAHYHNNNHNNN

NNNDNNNDRDTTAGGGTTWND
Dap-seq
OMalley et al.(2016)
AT1G72740_colamp_a
0.721 0.766
OS01G0708000
M02326_2.00
Oryza sativa
WRMCCTAVNN

NNBTAGGKYW
PBM
Weirauch et al.(2014)
pTH8716
0.679 0.681
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY18105 Myb 5 57

Links

Other Myb/SANT family TFs
Other Theobroma cacao TFs

41 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AT1G17520 Arabidopsis thaliana AT1G17520 I 0.743
Bostr.7128s0363 Boechera stricta Bostr.7128s0363 I 0.743
Cagra.0824s0121 Capsella grandiflora Cagra.0824s0121 I 0.743
Carubv10009890m.g Capsella rubella Carubv10009890m.g I 0.743
PRUPE_ppa016498mg Prunus persica PRUPE_ppa016498mg I 0.743
scaffold_101953.1 Arabidopsis lyrata scaffold_101953.1 I 0.743
cassava34930.m1 Manihot esculenta cassava34930.m1 I 0.743
29706.m001328 Ricinus communis 29706.m001328 I 0.743
Pm013309 Prunus mume Pm013309 I 0.743
TCM_029078 Theobroma cacao TCM_029078 I 0.743
evm.TU.supercontig_106.31 Carica papaya evm.TU.supercontig_106.31 I 0.743
Ciclev10026245m.g Citrus clementina Ciclev10026245m.g I 0.743
orange1.1g023740m.g Citrus sinensis orange1.1g023740m.g I 0.743
Thhalv10008387m.g Eutrema salsugineum Thhalv10008387m.g I 0.743
Gorai.009G143000 Gossypium raimondii Gorai.009G143000 I 0.721
AT1G72740 Arabidopsis thaliana AT1G72740 D 0.721
Bo8g067280 Brassica oleracea Bo8g067280 I 0.708
Bra016598 Brassica rapa Bra016598 I 0.708
Bo8g104830 Brassica oleracea Bo8g104830 I 0.698
Cla012798 Citrullus lanatus Cla012798 I 0.690
Bo5g023860 Brassica oleracea Bo5g023860 I 0.690
Bra025967 Brassica rapa Bra025967 I 0.690
Cucsa.341020 Cucumis sativus Cucsa.341020 I 0.690
Carubv10020636m.g Capsella rubella Carubv10020636m.g I 0.687
Bostr.10273s0077 Boechera stricta Bostr.10273s0077 I 0.687
Cagra.1013s0027 Capsella grandiflora Cagra.1013s0027 I 0.687
fgenesh2_kg.2__1540__AT1G72740.1 Arabidopsis lyrata fgenesh2_kg.2__1540__AT1G72740.1 I 0.687
GLYMA08G20270 Glycine max GLYMA08G20270 I 0.684
GLYMA07G00930 Glycine max GLYMA07G00930 I 0.684
ORUFI01G31370 Oryza rufipogon ORUFI01G31370 I 0.679
OGLUM01G32190 Oryza glumaepatula OGLUM01G32190 I 0.679
OBART01G28260 Oryza barthii OBART01G28260 I 0.679
OB01G37330 Oryza brachyantha OB01G37330 I 0.679
BGIOSGA004300 Oryza indica BGIOSGA004300 I 0.679
OS01G0708000 Oryza sativa OS01G0708000 D 0.679
OLONG_008666 Oryza longistaminata OLONG_008666 I 0.679
ORGLA01G0233700 Oryza glaberrima ORGLA01G0233700 I 0.679
OMERI05G07460 Oryza meridionalis OMERI05G07460 I 0.679
OPUNC01G28080 Oryza punctata OPUNC01G28080 I 0.679
ONIVA01G32190 Oryza nivara ONIVA01G32190 I 0.679
Bra030992 Brassica rapa Bra030992 I 0.678