VIT_17s0000g04130 (Vitis vinifera)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 VIT_17s0000g04130 T282088_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT1G49010
M01269_2.00 		Arabidopsis thaliana
NNYWATCNN
NNGATWRNN		 PBM
Lambert et al.(2019)
pTH11535 		0.665 0.813
AT1G49010
M07022_2.00 		Arabidopsis thaliana
NHHWWYCTTATCYWH
DWRGATAAGRWWDDN		 Dap-seq
OMalley et al.(2016)
At1g49010_col_a 		0.665 0.813
AT1G49010
M07023_2.00 		Arabidopsis thaliana
WWYCTTATCYWHWHH
DDWDWRGATAAGRWW		 Dap-seq
OMalley et al.(2016)
At1g49010_colamp_a 		0.665 0.813
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_17s0000g04130.t01 Myb 131 176

Links

Other Myb/SANT family TFs
Other Vitis vinifera TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_012262 Theobroma cacao TCM_012262 I 0.763
cassava2458.valid.m1 Manihot esculenta cassava2458.valid.m1 N 0.750
Eucgr.K02659 Eucalyptus grandis Eucgr.K02659 I 0.733
Ciclev10021342m.g Citrus clementina Ciclev10021342m.g I 0.733
Aquca_026_00199 Aquilegia coerulea Aquca_026_00199 N 0.722
Solyc03g119740.2 Solanum lycopersicum Solyc03g119740.2 I 0.705
Pm030197 Prunus mume Pm030197 I 0.699
PRUPE_ppa009092mg Prunus persica PRUPE_ppa009092mg I 0.699
GLYMA05G07980 Glycine max GLYMA05G07980 I 0.696
SapurV1A.0583s0020 Salix purpurea SapurV1A.0583s0020 I 0.693
Gorai.006G063000 Gossypium raimondii Gorai.006G063000 I 0.690
Thhalv10011650m.g Eutrema salsugineum Thhalv10011650m.g I 0.690
chr4.LjB15O07.50.nc Lotus japonicus chr4.LjB15O07.50.nc I 0.688
gene26214-v1.0-hybrid Fragaria vesca gene26214-v1.0-hybrid I 0.678
mgf017230m Mimulus guttatus mgf017230m N 0.678
MTR_4g111975 Medicago truncatula MTR_4g111975 I 0.676
Ca_06612 Cicer arietinum Ca_06612 I 0.676
GLYMA17G13010 Glycine max GLYMA17G13010 I 0.676
MDP0000241185 Malus domestica MDP0000241185 N 0.674
Cucsa.198920 Cucumis sativus Cucsa.198920 I 0.669
30174.m008717 Ricinus communis 30174.m008717 I 0.668
AT1G49010 Arabidopsis thaliana AT1G49010 D 0.665
scaffold_104540.1 Arabidopsis lyrata scaffold_104540.1 I 0.661