Cla006288 (Citrullus lanatus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cla006288 T283169_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB55
M00876_2.00
Arabidopsis thaliana
ACCWAMCD

HGKTWGGT
PBM
Franco-Zorrilla et al.(2014)
MYB55
0.707 0.720
MYB55
M07102_2.00
Arabidopsis thaliana
HNNNHBYAMCWAMCD

HGKTWGKTRVDNNND
Dap-seq
OMalley et al.(2016)
MYB55_colamp_a
0.707 0.720
MYB55
M07103_2.00
Arabidopsis thaliana
NYNYAMCHACCRHH

DDYGGTDGKTRNRN
Dap-seq
OMalley et al.(2016)
MYB55_col
0.707 0.720
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla006288 Myb 14 61
Cla006288 Myb 67 112

Links

Other Myb/SANT family TFs
Other Citrullus lanatus TFs

270 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_08647 Aegilops tauschii F775_08647 I 0.682
F775_28584 Aegilops tauschii F775_28584 I 0.702
AMTR_s00045p00146180 Amborella trichopoda AMTR_s00045p00146180 I 0.697
Aquca_003_00245 Aquilegia coerulea Aquca_003_00245 I 0.697
AtMYB18 Arabidopsis lyrata fgenesh1_pg.C_scaffold_7001401 I 0.696
AtMYB50 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1003728 I 0.680
ATMYB86 Arabidopsis lyrata fgenesh2_kg.6__2630__AT5G26660.1 I 0.677
AtMYB19 Arabidopsis lyrata fgenesh2_kg.8__1111__AT5G52260.1 I 0.686
MYB55 Arabidopsis lyrata fgenesh2_kg.6__3543__AT4G01680.1 I 0.707
MYB55 Arabidopsis thaliana AT4G01680 D 0.707
AtMYB50 Arabidopsis thaliana AT1G57560 I 0.680
LAF1 Arabidopsis thaliana AT4G25560 I 0.705
AtMYB19 Arabidopsis thaliana AT5G52260 I 0.686
MYB86 Arabidopsis thaliana AT5G26660 I 0.677
Bostr.4825s0008 Boechera stricta Bostr.4825s0008 I 0.707
Bostr.7867s0367 Boechera stricta Bostr.7867s0367 I 0.684
Bostr.7305s0041 Boechera stricta Bostr.7305s0041 I 0.686
Bostr.30057s0004 Boechera stricta Bostr.30057s0004 I 0.684
Bostr.29827s0161 Boechera stricta Bostr.29827s0161 I 0.677
BRADI5G16672 Brachypodium distachyon BRADI5G16672 I 0.696
BRADI3G49970 Brachypodium distachyon BRADI3G49970 I 0.677
BRADI2G11080 Brachypodium distachyon BRADI2G11080 I 0.693
BRADI1G20250 Brachypodium distachyon BRADI1G20250 I 0.688
BRADI2G36730 Brachypodium distachyon BRADI2G36730 I 0.702
Bo2g156300 Brassica oleracea Bo2g156300 I 0.677
Bo7g110400 Brassica oleracea Bo7g110400 N 0.674
Bo8g111090 Brassica oleracea Bo8g111090 I 0.667
Bo9g004210 Brassica oleracea Bo9g004210 I 0.707
Bo9g010860 Brassica oleracea Bo9g010860 I 0.677
Bo3g023270 Brassica oleracea Bo3g023270 I 0.686
Bo1g040300 Brassica oleracea Bo1g040300 N 0.694
Bo7g095130 Brassica oleracea Bo7g095130 I 0.677
Bra031669 Brassica rapa Bra031669 I 0.667
Bra029129 Brassica rapa Bra029129 I 0.686
Bra013900 Brassica rapa Bra013900 N 0.687
Bra019154 Brassica rapa Bra019154 N 0.690
Bra036588 Brassica rapa Bra036588 I 0.677
Bra036317 Brassica rapa Bra036317 I 0.707
PK03176.1 Cannabis sativa PK03176.1 I 0.697
PK18276.1 Cannabis sativa PK18276.1 I 0.724
Cagra.0334s0011 Capsella grandiflora Cagra.0334s0011 I 0.707
Cagra.23492s0001 Capsella grandiflora Cagra.23492s0001 I 0.677
Cagra.23907s0010 Capsella grandiflora Cagra.23907s0010 I 0.684
Cagra.0094s0035 Capsella grandiflora Cagra.0094s0035 I 0.673
Carubv10001224m.g Capsella rubella Carubv10001224m.g I 0.677
Carubv10001308m.g Capsella rubella Carubv10001308m.g I 0.707
Carubv10007732m.g Capsella rubella Carubv10007732m.g I 0.684
Carubv10027541m.g Capsella rubella Carubv10027541m.g I 0.673
evm.TU.supercontig_107.47 Carica papaya evm.TU.supercontig_107.47 I 0.692
Ca_03564 Cicer arietinum Ca_03564 I 0.707
Ca_03589 Cicer arietinum Ca_03589 I 0.707
Ca_19758 Cicer arietinum Ca_19758 I 0.692
Ca_01055 Cicer arietinum Ca_01055 I 0.677
Ca_01072 Cicer arietinum Ca_01072 I 0.707
Cla001724 Citrullus lanatus Cla001724 I 0.678
Cla003497 Citrullus lanatus Cla003497 I 0.671
Cla020303 Citrullus lanatus Cla020303 I 0.667
Cla005219 Citrullus lanatus Cla005219 I 0.697
Ciclev10020144m.g Citrus clementina Ciclev10020144m.g I 0.707
orange1.1g013300m.g Citrus sinensis orange1.1g013300m.g I 0.707
orange1.1g045400m.g Citrus sinensis orange1.1g045400m.g I 0.670
Cucsa.051050 Cucumis sativus Cucsa.051050 I 0.697
Cucsa.107740 Cucumis sativus Cucsa.107740 I 0.870
Cucsa.107730 Cucumis sativus Cucsa.107730 N 0.822
Cucsa.090310 Cucumis sativus Cucsa.090310 I 0.667
Eucgr.K00250 Eucalyptus grandis Eucgr.K00250 I 0.733
Eucgr.K00555 Eucalyptus grandis Eucgr.K00555 I 0.677
Eucgr.B01827 Eucalyptus grandis Eucgr.B01827 I 0.661
Eucgr.A02796 Eucalyptus grandis Eucgr.A02796 I 0.664
Eucgr.A00996 Eucalyptus grandis Eucgr.A00996 I 0.685
Eucgr.B02197 Eucalyptus grandis Eucgr.B02197 I 0.697
Thhalv10028778m.g Eutrema salsugineum Thhalv10028778m.g I 0.690
Thhalv10014388m.g Eutrema salsugineum Thhalv10014388m.g I 0.677
Thhalv10023601m.g Eutrema salsugineum Thhalv10023601m.g I 0.680
Thhalv10004450m.g Eutrema salsugineum Thhalv10004450m.g I 0.677
gene13281-v1.0-hybrid Fragaria vesca gene13281-v1.0-hybrid I 0.686
gene22961-v1.0-hybrid Fragaria vesca gene22961-v1.0-hybrid I 0.697
GLYMA10G27940 Glycine max GLYMA10G27940 I 0.707
GLYMA20G29710 Glycine max GLYMA20G29710 I 0.716
GLYMA19G41250 Glycine max GLYMA19G41250 I 0.707
GLYMA10G38110 Glycine max GLYMA10G38110 I 0.716
GLYMA10G28250 Glycine max GLYMA10G28250 I 0.707
GLYMA19G41010 Glycine max GLYMA19G41010 I 0.707
GLYMA16G31280 Glycine max GLYMA16G31280 I 0.709
GLYMA09G25655 Glycine max GLYMA09G25655 I 0.699
GLYMA20G22230 Glycine max GLYMA20G22230 I 0.707
GLYMA03G38410 Glycine max GLYMA03G38410 I 0.707
GLYMA03G38660 Glycine max GLYMA03G38660 I 0.707
GLYMA02G00960 Glycine max GLYMA02G00960 I 0.707
GLYMA02G12266 Glycine max GLYMA02G12266 I 0.662
Gorai.007G011100 Gossypium raimondii Gorai.007G011100 I 0.726
Gorai.001G148500 Gossypium raimondii Gorai.001G148500 I 0.707
Gorai.008G133700 Gossypium raimondii Gorai.008G133700 I 0.707
Gorai.008G277900 Gossypium raimondii Gorai.008G277900 I 0.722
Gorai.007G118200 Gossypium raimondii Gorai.007G118200 I 0.707
Gorai.004G147600 Gossypium raimondii Gorai.004G147600 I 0.707
MLOC_59663 Hordeum vulgare MLOC_59663 I 0.702
MLOC_73614 Hordeum vulgare MLOC_73614 I 0.700
MLOC_13019 Hordeum vulgare MLOC_13019 I 0.682
LPERR04G16000 Leersia perrieri LPERR04G16000 I 0.673
LPERR05G02400 Leersia perrieri LPERR05G02400 I 0.697
LPERR07G20400 Leersia perrieri LPERR07G20400 I 0.683
LPERR01G10930 Leersia perrieri LPERR01G10930 I 0.697
Lus10039213.g Linum usitatissimum Lus10039213.g I 0.705
Lus10038022.g Linum usitatissimum Lus10038022.g I 0.707
Lus10027458.g Linum usitatissimum Lus10027458.g I 0.705
Lus10005739.g Linum usitatissimum Lus10005739.g I 0.661
chr5.CM0148.380.nc Lotus japonicus chr5.CM0148.380.nc I 0.709
chr5.CM0048.320.nd Lotus japonicus chr5.CM0048.320.nd I 0.707
chr5.CM0048.130.nc Lotus japonicus chr5.CM0048.130.nc I 0.700
chr1.CM0206.990.nd Lotus japonicus chr1.CM0206.990.nd I 0.677
chr1.CM0122.20.nc Lotus japonicus chr1.CM0122.20.nc I 0.677
MDP0000601420 Malus domestica MDP0000601420 I 0.697
MDP0000152575 Malus domestica MDP0000152575 I 0.683
MDP0000896053 Malus domestica MDP0000896053 I 0.668
MDP0000932804 Malus domestica MDP0000932804 I 0.697
MDP0000653903 Malus domestica MDP0000653903 I 0.697
cassava12868.valid.m1 Manihot esculenta cassava12868.valid.m1 I 0.697
cassava17679.valid.m1 Manihot esculenta cassava17679.valid.m1 I 0.697
cassava21326.m1 Manihot esculenta cassava21326.m1 I 0.687
cassava26284.m1 Manihot esculenta cassava26284.m1 I 0.710
cassava33008.m1 Manihot esculenta cassava33008.m1 I 0.707
MTR_1g100667 Medicago truncatula MTR_1g100667 I 0.721
MTR_1g085040 Medicago truncatula MTR_1g085040 I 0.707
MTR_7g110830 Medicago truncatula MTR_7g110830 I 0.707
MTR_7g111290 Medicago truncatula MTR_7g111290 I 0.720
MTR_6g055910 Medicago truncatula MTR_6g055910 I 0.729
MTR_1g085640 Medicago truncatula MTR_1g085640 I 0.707
mgf003709m Mimulus guttatus mgf003709m I 0.697
mgf024107m Mimulus guttatus mgf024107m I 0.690
mgf024114m Mimulus guttatus mgf024114m I 0.663
GSMUA_Achr4G19560_001 Musa acuminata GSMUA_Achr4G19560_001 I 0.679
GSMUA_Achr3G24580_001 Musa acuminata GSMUA_Achr3G24580_001 I 0.697
GSMUA_Achr3G12200_001 Musa acuminata GSMUA_Achr3G12200_001 I 0.699
GSMUA_Achr5G18400_001 Musa acuminata GSMUA_Achr5G18400_001 I 0.706
GSMUA_Achr2G18440_001 Musa acuminata GSMUA_Achr2G18440_001 I 0.706
GSMUA_Achr2G01830_001 Musa acuminata GSMUA_Achr2G01830_001 I 0.677
GSMUA_Achr1G25120_001 Musa acuminata GSMUA_Achr1G25120_001 I 0.684
GSMUA_Achr1G18990_001 Musa acuminata GSMUA_Achr1G18990_001 I 0.669
GSMUA_Achr11G15910_001 Musa acuminata GSMUA_Achr11G15910_001 I 0.706
GSMUA_Achr11G00430_001 Musa acuminata GSMUA_Achr11G00430_001 I 0.706
GSMUA_Achr2G07930_001 Musa acuminata GSMUA_Achr2G07930_001 I 0.680
GSMUA_Achr8G11340_001 Musa acuminata GSMUA_Achr8G11340_001 I 0.694
OBART01G11910 Oryza barthii OBART01G11910 I 0.697
OBART04G19730 Oryza barthii OBART04G19730 I 0.703
OBART02G25570 Oryza barthii OBART02G25570 I 0.667
OBART05G02690 Oryza barthii OBART05G02690 I 0.697
OB05G12630 Oryza brachyantha OB05G12630 I 0.697
OB01G21720 Oryza brachyantha OB01G21720 I 0.697
OB04G26810 Oryza brachyantha OB04G26810 I 0.682
OB02G32950 Oryza brachyantha OB02G32950 I 0.667
ORGLA10G0151700 Oryza glaberrima ORGLA10G0151700 I 0.703
ORGLA05G0025500 Oryza glaberrima ORGLA05G0025500 I 0.697
ORGLA07G0264800 Oryza glaberrima ORGLA07G0264800 I 0.683
ORGLA01G0100400 Oryza glaberrima ORGLA01G0100400 I 0.697
ORGLA04G0168700 Oryza glaberrima ORGLA04G0168700 I 0.703
OGLUM05G02680 Oryza glumaepatula OGLUM05G02680 I 0.697
OGLUM07G23470 Oryza glumaepatula OGLUM07G23470 I 0.683
OGLUM04G19590 Oryza glumaepatula OGLUM04G19590 I 0.703
OGLUM02G26100 Oryza glumaepatula OGLUM02G26100 I 0.667
OGLUM01G13340 Oryza glumaepatula OGLUM01G13340 I 0.697
BGIOSGA001872 Oryza indica BGIOSGA001872 I 0.697
BGIOSGA010658 Oryza indica BGIOSGA010658 I 0.683
BGIOSGA016820 Oryza indica BGIOSGA016820 I 0.703
BGIOSGA019160 Oryza indica BGIOSGA019160 I 0.697
BGIOSGA026208 Oryza indica BGIOSGA026208 I 0.683
BGIOSGA008698 Oryza indica BGIOSGA008698 I 0.667
OLONG_014417 Oryza longistaminata OLONG_014417 I 0.697
OLONG_008768 Oryza longistaminata OLONG_008768 I 0.697
OMERI05G02610 Oryza meridionalis OMERI05G02610 I 0.697
OMERI07G19830 Oryza meridionalis OMERI07G19830 I 0.683
OMERI02G25080 Oryza meridionalis OMERI02G25080 I 0.667
OMERI03G17220 Oryza meridionalis OMERI03G17220 I 0.683
OMERI04G16730 Oryza meridionalis OMERI04G16730 I 0.703
ONIVA02G07540 Oryza nivara ONIVA02G07540 I 0.683
ONIVA01G14120 Oryza nivara ONIVA01G14120 I 0.697
ONIVA04G17950 Oryza nivara ONIVA04G17950 I 0.703
ONIVA02G28010 Oryza nivara ONIVA02G28010 I 0.667
ONIVA05G02580 Oryza nivara ONIVA05G02580 I 0.697
OPUNC07G22080 Oryza punctata OPUNC07G22080 I 0.683
OPUNC05G02540 Oryza punctata OPUNC05G02540 I 0.697
OPUNC04G17450 Oryza punctata OPUNC04G17450 I 0.703
OPUNC03G17950 Oryza punctata OPUNC03G17950 I 0.664
OPUNC02G23410 Oryza punctata OPUNC02G23410 I 0.667
OPUNC01G11600 Oryza punctata OPUNC01G11600 I 0.697
ORUFI07G24600 Oryza rufipogon ORUFI07G24600 I 0.683
ORUFI01G12800 Oryza rufipogon ORUFI01G12800 I 0.697
ORUFI04G21270 Oryza rufipogon ORUFI04G21270 I 0.703
ORUFI05G02790 Oryza rufipogon ORUFI05G02790 I 0.697
OS05G0140100 Oryza sativa OS05G0140100 I 0.697
OS04G0532800 Oryza sativa OS04G0532800 I 0.703
OS01G0285300 Oryza sativa OS01G0285300 I 0.697
Pavir.Ab02021 Panicum virgatum Pavir.Ab02021 I 0.680
Pavir.Ab02417 Panicum virgatum Pavir.Ab02417 I 0.691
Pavir.Ea01054 Panicum virgatum Pavir.Ea01054 I 0.697
Pavir.Eb01178 Panicum virgatum Pavir.Eb01178 I 0.697
Pavir.Ga00879 Panicum virgatum Pavir.Ga00879 I 0.712
Pavir.J40848 Panicum virgatum Pavir.J40848 I 0.697
Pavir.J03230 Panicum virgatum Pavir.J03230 I 0.713
Pavir.J31344 Panicum virgatum Pavir.J31344 I 0.697
Pavir.Gb00734 Panicum virgatum Pavir.Gb00734 I 0.712
PDK_20s1606731g001 Phoenix dactylifera PDK_20s1606731g001 I 0.685
gw1.277.32.1 Physcomitrella patens gw1.277.32.1 I 0.681
gw1.149.61.1 Physcomitrella patens gw1.149.61.1 I 0.669
fgenesh1_pg.scaffold_189000016 Physcomitrella patens fgenesh1_pg.scaffold_189000016 I 0.680
e_gw1.24.66.1 Physcomitrella patens e_gw1.24.66.1 I 0.680
POPTR_0014s10680 Populus trichocarpa POPTR_0014s10680 I 0.707
POPTR_0005s00340 Populus trichocarpa POPTR_0005s00340 I 0.677
POPTR_0002s18700 Populus trichocarpa POPTR_0002s18700 I 0.690
POPTR_0015s13190 Populus trichocarpa POPTR_0015s13190 I 0.675
Pm003267 Prunus mume Pm003267 I 0.688
Pm019344 Prunus mume Pm019344 I 0.688
PRUPE_ppa019718mg Prunus persica PRUPE_ppa019718mg I 0.688
PRUPE_ppa019729mg Prunus persica PRUPE_ppa019729mg I 0.688
SapurV1A.0321s0070 Salix purpurea SapurV1A.0321s0070 I 0.707
SapurV1A.0754s0180 Salix purpurea SapurV1A.0754s0180 I 0.675
SapurV1A.1016s0030 Salix purpurea SapurV1A.1016s0030 I 0.677
SapurV1A.1077s0040 Salix purpurea SapurV1A.1077s0040 I 0.677
SapurV1A.1253s0100 Salix purpurea SapurV1A.1253s0100 I 0.667
SapurV1A.1387s0090 Salix purpurea SapurV1A.1387s0090 I 0.677
SapurV1A.3474s0020 Salix purpurea SapurV1A.3474s0020 I 0.707
SapurV1A.0264s0440 Salix purpurea SapurV1A.0264s0440 I 0.669
SELMODRAFT_437219 Selaginella moellendorffii SELMODRAFT_437219 I 0.702
Si022113m.g Setaria italica Si022113m.g I 0.697
Si001565m.g Setaria italica Si001565m.g I 0.697
Si017851m.g Setaria italica Si017851m.g I 0.680
Si017947m.g Setaria italica Si017947m.g I 0.682
Si012304m.g Setaria italica Si012304m.g I 0.712
Si029872m.g Setaria italica Si029872m.g I 0.683
Si036638m.g Setaria italica Si036638m.g I 0.713
Solyc01g102340.2 Solanum lycopersicum Solyc01g102340.2 I 0.704
Solyc10g044680.1 Solanum lycopersicum Solyc10g044680.1 I 0.704
PGSC0003DMG400018279 Solanum tuberosum PGSC0003DMG400018279 I 0.704
PGSC0003DMG400015767 Solanum tuberosum PGSC0003DMG400015767 I 0.715
PGSC0003DMG400014291 Solanum tuberosum PGSC0003DMG400014291 I 0.674
Sb04g024000 Sorghum bicolor Sb04g024000 I 0.680
Sb02g040480 Sorghum bicolor Sb02g040480 I 0.674
Sb03g011640 Sorghum bicolor Sb03g011640 I 0.697
Sb04g033680 Sorghum bicolor Sb04g033680 I 0.665
Sb09g003100 Sorghum bicolor Sb09g003100 I 0.706
Sb01g034270 Sorghum bicolor Sb01g034270 I 0.683
Sb06g023610 Sorghum bicolor Sb06g023610 I 0.676
TCM_026853 Theobroma cacao TCM_026853 I 0.697
TCM_004965 Theobroma cacao TCM_004965 I 0.707
TCM_015157 Theobroma cacao TCM_015157 I 0.717
Traes_2BL_03F3475CD Triticum aestivum Traes_2BL_03F3475CD I 0.696
Traes_2BL_604FE7639 Triticum aestivum Traes_2BL_604FE7639 I 0.696
Traes_2BL_7CEC6A8D7 Triticum aestivum Traes_2BL_7CEC6A8D7 I 0.700
Traes_6DL_A014E9069 Triticum aestivum Traes_6DL_A014E9069 I 0.682
Traes_2BL_35241DE8D Triticum aestivum Traes_2BL_35241DE8D I 0.700
Traes_6BL_CE61B9510 Triticum aestivum Traes_6BL_CE61B9510 I 0.682
Traes_6AL_D10CBA40D Triticum aestivum Traes_6AL_D10CBA40D I 0.682
Traes_2AL_AF9357B4C Triticum aestivum Traes_2AL_AF9357B4C N 0.680
Traes_2AL_962A9D448 Triticum aestivum Traes_2AL_962A9D448 I 0.678
Traes_2AL_2D4100475 Triticum aestivum Traes_2AL_2D4100475 I 0.700
Traes_1DS_5BAD8947E Triticum aestivum Traes_1DS_5BAD8947E I 0.702
Traes_1BS_92EA1F290 Triticum aestivum Traes_1BS_92EA1F290 I 0.702
Traes_1AS_1EE692FDC Triticum aestivum Traes_1AS_1EE692FDC I 0.702
TRIUR3_15020 Triticum urartu TRIUR3_15020 I 0.700
TRIUR3_32691 Triticum urartu TRIUR3_32691 I 0.682
VIT_07s0005g02480 Vitis vinifera VIT_07s0005g02480 I 0.690
VIT_14s0060g00240 Vitis vinifera VIT_14s0060g00240 I 0.697
GRMZM2G001223 Zea mays GRMZM2G001223 I 0.663
GRMZM2G127490 Zea mays GRMZM2G127490 I 0.697
GRMZM2G147698 Zea mays GRMZM2G147698 I 0.713
GRMZM2G150841 Zea mays GRMZM2G150841 I 0.674
GRMZM2G170049 Zea mays GRMZM2G170049 I 0.682
GRMZM2G496770 Zea mays GRMZM2G496770 I 0.665
GRMZM2G171781 Zea mays GRMZM2G171781 I 0.697
GRMZM2G017520 Zea mays GRMZM2G017520 I 0.680