Cla006872 (Citrullus lanatus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cla006872 T283173_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB73
M07114_2.00
Arabidopsis thaliana
TAACBGWHWHW

WDWDWCVGTTA
Dap-seq
OMalley et al.(2016)
MYB73_col_a
0.802 0.882
PK28565.1
M02357_2.00
Cannabis sativa
TAACBGTY

RACVGTTA
PBM
Weirauch et al.(2014)
pTH9653
0.798 0.882
AtMYB70
M01071_2.00
Arabidopsis thaliana
HAACBRHHN

NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH8588
0.782 0.871
AtMYB70
M07048_2.00
Arabidopsis thaliana
YAACBGWHWWAAMN

NKTTWWDWCVGTTR
Dap-seq
OMalley et al.(2016)
MYB70_col_a
0.782 0.871
MYB44
M01082_2.00
Arabidopsis thaliana
HAACBRHHN

NDDYVGTTD
PBM
Sullivan et al.(2014)
pTH7078
0.759 0.828
MYB44
M07155_2.00
Arabidopsis thaliana
HDTAACBGWHW

WDWCVGTTAHD
Dap-seq
OMalley et al.(2016)
MYB44_colamp_a
0.759 0.828
MYB44
M07156_2.00
Arabidopsis thaliana
HAACBRWHWWAACBGHHWH

DWDDCVGTTWWDWYVGTTD
Dap-seq
OMalley et al.(2016)
MYB44_col
0.759 0.828
F3A4.140
M02299_2.00
Arabidopsis thaliana
YAACBGYY

RRCVGTTR
PBM
Weirauch et al.(2014)
pTH7112
0.745 0.828
F3A4.140
M07095_2.00
Arabidopsis thaliana
TAACBGYHWHNNHNN

NNDNNDWDRCVGTTA
Dap-seq
OMalley et al.(2016)
MYB77_col_a
0.745 0.828
F3A4.140
M07096_2.00
Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV

BKTWWDWTASGGTTRCGGTT
Dap-seq
OMalley et al.(2016)
MYB77_colamp_a
0.745 0.828
F3A4.140
M02701_2.00
Arabidopsis thaliana
SYAACYGYCVHBN

NVDBGRCRGTTRS
SELEX
Mathelier et al.(2014)
MA0575.1
0.745 0.828
F3A4.140
M11044_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATMYB77_01
0.745 0.828
PK07741.1
M01277_2.00
Cannabis sativa
HAMCBRHHN

NDDYVGKTD
PBM
Lambert et al.(2019)
pTH11469
0.669 0.763
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla006872 Myb 9 55
Cla006872 Myb 61 106

Links

Other Myb/SANT family TFs
Other Citrullus lanatus TFs

Invalid Input OrderBy

265 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action