Cla008455 (Citrullus lanatus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cla008455 T283190_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK17526.1
M02353_2.00
Cannabis sativa
NNTTATCCAN

NTGGATAANN
PBM
Weirauch et al.(2014)
pTH9588
0.672 0.857
fgenesh1_pg.scaffold_70000111
M02342_2.00
Physcomitrella patens
NNHNATCBN

NVGATNDNN
PBM
Weirauch et al.(2014)
pTH8492
0.672 0.829
KUA1
M02312_2.00
Arabidopsis thaliana
NNTTATCCDN

NHGGATAANN
PBM
Weirauch et al.(2014)
pTH7647
0.663 0.800
KUA1
M07136_2.00
Arabidopsis thaliana
WWHHTTATCCAHWW

WWDTGGATAADDWW
Dap-seq
OMalley et al.(2016)
At5g47390_colamp_a
0.663 0.800
KUA1
M07137_2.00
Arabidopsis thaliana
HHWDYHTTATCCAHW

WDTGGATAADRHWDD
Dap-seq
OMalley et al.(2016)
At5g47390_col_b
0.663 0.800
PK23829.1
M02355_2.00
Cannabis sativa
VTTATCCD

HGGATAAB
PBM
Weirauch et al.(2014)
pTH9592
0.661 0.829
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla008455 Myb 89 124

Links

Other Myb/SANT family TFs
Other Citrullus lanatus TFs

225 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PGSC0003DMG400009570 Solanum tuberosum PGSC0003DMG400009570 I 0.821
Aquca_004_00370 Aquilegia coerulea Aquca_004_00370 I 0.818
chr4.CM0244.480.nc Lotus japonicus chr4.CM0244.480.nc I 0.808
LjSGA_143592.1 Lotus japonicus LjSGA_143592.1 I 0.808
cassava4263.m1 Manihot esculenta cassava4263.m1 I 0.782
PGSC0003DMG400027126 Solanum tuberosum PGSC0003DMG400027126 I 0.782
mgf017789m Mimulus guttatus mgf017789m I 0.782
OB01G15640 Oryza brachyantha OB01G15640 I 0.771
MTR_1g033620 Medicago truncatula MTR_1g033620 I 0.764
F775_08891 Aegilops tauschii F775_08891 I 0.764
PGSC0003DMG400020344 Solanum tuberosum PGSC0003DMG400020344 I 0.764
Gorai.008G233500 Gossypium raimondii Gorai.008G233500 I 0.761
MLOC_76271 Hordeum vulgare MLOC_76271 I 0.753
BRADI2G05590 Brachypodium distachyon BRADI2G05590 I 0.753
SapurV1A.1882s0030 Salix purpurea SapurV1A.1882s0030 I 0.749
MDP0000233793 Malus domestica MDP0000233793 I 0.730
Traes_1AL_1360F98E7 Triticum aestivum Traes_1AL_1360F98E7 N 0.729
GLYMA05G36290 Glycine max GLYMA05G36290 I 0.725
TRIUR3_09932 Triticum urartu TRIUR3_09932 I 0.725
OMERI01G05960 Oryza meridionalis OMERI01G05960 I 0.713
TRIUR3_18966 Triticum urartu TRIUR3_18966 I 0.704
Gorai.004G196500 Gossypium raimondii Gorai.004G196500 I 0.704
OBART04G08050 Oryza barthii OBART04G08050 I 0.699
Traes_3AL_891566958 Triticum aestivum Traes_3AL_891566958 I 0.699
LjB06N21.60.nd Lotus japonicus LjB06N21.60.nd N 0.698
PGSC0003DMG400020730 Solanum tuberosum PGSC0003DMG400020730 I 0.696
PDK_20s1532501g001 Phoenix dactylifera PDK_20s1532501g001 I 0.694
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I 0.694
evm.TU.supercontig_35.12 Carica papaya evm.TU.supercontig_35.12 I 0.694
Cucsa.285620 Cucumis sativus Cucsa.285620 I 0.694
Lus10004248.g Linum usitatissimum Lus10004248.g I 0.694
Sb03g006450 Sorghum bicolor Sb03g006450 I 0.694
PGSC0003DMG400024572 Solanum tuberosum PGSC0003DMG400024572 I 0.694
MTR_4g015130 Medicago truncatula MTR_4g015130 I 0.689
Cucsa.094040 Cucumis sativus Cucsa.094040 I 0.686
Aquca_001_00103 Aquilegia coerulea Aquca_001_00103 I 0.686
GLYMA06G19960 Glycine max GLYMA06G19960 I 0.684
MTR_4g107230 Medicago truncatula MTR_4g107230 I 0.684
GLYMA04G34720 Glycine max GLYMA04G34720 I 0.684
Ca_03888 Cicer arietinum Ca_03888 I 0.683
PGSC0003DMG400026442 Solanum tuberosum PGSC0003DMG400026442 I 0.682
Solyc12g044610.1 Solanum lycopersicum Solyc12g044610.1 I 0.682
Traes_2AL_C13CD3ECB Triticum aestivum Traes_2AL_C13CD3ECB I 0.682
Traes_7DS_C6BEE3896 Triticum aestivum Traes_7DS_C6BEE3896 I 0.682
TRIUR3_30912 Triticum urartu TRIUR3_30912 I 0.682
ORGLA03G0402100 Oryza glaberrima ORGLA03G0402100 I 0.682
OLONG_027538 Oryza longistaminata OLONG_027538 I 0.682
Solyc07g026680.2 Solanum lycopersicum Solyc07g026680.2 I 0.676
Gorai.003G175300 Gossypium raimondii Gorai.003G175300 I 0.673
Ca_05889 Cicer arietinum Ca_05889 I 0.672
Ca_17597 Cicer arietinum Ca_17597 I 0.672
orange1.1g021351m.g Citrus sinensis orange1.1g021351m.g I 0.672
VIT_11s0016g02410 Vitis vinifera VIT_11s0016g02410 I 0.672
VIT_17s0000g07510 Vitis vinifera VIT_17s0000g07510 I 0.672
Cla000916 Citrullus lanatus Cla000916 I 0.672
Pm006358 Prunus mume Pm006358 I 0.672
MDP0000938309 Malus domestica MDP0000938309 I 0.672
MDP0000758053 Malus domestica MDP0000758053 I 0.672
29794.m003333 Ricinus communis 29794.m003333 I 0.672
29736.m002089 Ricinus communis 29736.m002089 I 0.672
Pm024648 Prunus mume Pm024648 I 0.672
VIT_01s0026g01050 Vitis vinifera VIT_01s0026g01050 I 0.672
SapurV1A.0007s0060 Salix purpurea SapurV1A.0007s0060 I 0.672
PK17526.1 Cannabis sativa PK17526.1 D 0.672
Thhalv10019007m.g Eutrema salsugineum Thhalv10019007m.g I 0.672
chr2.CM0028.230.nd Lotus japonicus chr2.CM0028.230.nd I 0.672
LjSGA_030087.1 Lotus japonicus LjSGA_030087.1 I 0.672
TCM_037687 Theobroma cacao TCM_037687 I 0.672
Traes_3AS_6626D4A69 Triticum aestivum Traes_3AS_6626D4A69 I 0.672
AMTR_s00074p00097250 Amborella trichopoda AMTR_s00074p00097250 I 0.672
MDP0000230601 Malus domestica MDP0000230601 I 0.672
SapurV1A.0086s0190 Salix purpurea SapurV1A.0086s0190 I 0.672
SapurV1A.0113s0280 Salix purpurea SapurV1A.0113s0280 I 0.672
SapurV1A.1274s0030 Salix purpurea SapurV1A.1274s0030 I 0.672
orange1.1g022562m.g Citrus sinensis orange1.1g022562m.g I 0.672
Lus10036652.g Linum usitatissimum Lus10036652.g I 0.672
fgenesh1_pg.scaffold_70000111 Physcomitrella patens fgenesh1_pg.scaffold_70000111 D 0.672
gene00738-v1.0-hybrid Fragaria vesca gene00738-v1.0-hybrid I 0.672
fgenesh1_pg.scaffold_66000048 Physcomitrella patens fgenesh1_pg.scaffold_66000048 I 0.672
fgenesh1_pg.scaffold_66000046 Physcomitrella patens fgenesh1_pg.scaffold_66000046 I 0.672
estExt_fgenesh1_pg.C_1880060 Physcomitrella patens estExt_fgenesh1_pg.C_1880060 I 0.672
Aquca_002_00384 Aquilegia coerulea Aquca_002_00384 I 0.672
evm.TU.supercontig_5.314 Carica papaya evm.TU.supercontig_5.314 I 0.672
Ciclev10021454m.g Citrus clementina Ciclev10021454m.g I 0.672
Ciclev10032167m.g Citrus clementina Ciclev10032167m.g I 0.672
TCM_037276 Theobroma cacao TCM_037276 I 0.672
Eucgr.K02897 Eucalyptus grandis Eucgr.K02897 I 0.672
Bostr.10273s0355 Boechera stricta Bostr.10273s0355 I 0.672
Gorai.007G034000 Gossypium raimondii Gorai.007G034000 I 0.672
Cucsa.361050 Cucumis sativus Cucsa.361050 I 0.672
cassava17572.valid.m1 Manihot esculenta cassava17572.valid.m1 I 0.672
cassava22868.valid.m1 Manihot esculenta cassava22868.valid.m1 I 0.672
30147.m014028 Ricinus communis 30147.m014028 I 0.672
Lus10027781.g Linum usitatissimum Lus10027781.g I 0.672
Lus10030813.g Linum usitatissimum Lus10030813.g I 0.672
cassava23010.valid.m1 Manihot esculenta cassava23010.valid.m1 I 0.672
cassava23011.valid.m1 Manihot esculenta cassava23011.valid.m1 I 0.672
Gorai.007G378300 Gossypium raimondii Gorai.007G378300 I 0.672
Cucsa.098110 Cucumis sativus Cucsa.098110 I 0.672
Gorai.010G081800 Gossypium raimondii Gorai.010G081800 I 0.672
Lus10013289.g Linum usitatissimum Lus10013289.g I 0.672
Eucgr.B02575 Eucalyptus grandis Eucgr.B02575 I 0.672
Traes_3DS_8AF1A10AB Triticum aestivum Traes_3DS_8AF1A10AB I 0.672
PGSC0003DMG400033030 Solanum tuberosum PGSC0003DMG400033030 I 0.672
PGSC0003DMG400000340 Solanum tuberosum PGSC0003DMG400000340 I 0.672
POPTR_0006s15480 Populus trichocarpa POPTR_0006s15480 I 0.672
POPTR_0008s19610 Populus trichocarpa POPTR_0008s19610 I 0.672
PRUPE_ppa008539mg Prunus persica PRUPE_ppa008539mg I 0.672
POPTR_0010s04860 Populus trichocarpa POPTR_0010s04860 I 0.672
fgenesh2_kg.2__1257__AT1G70000.1 Arabidopsis lyrata fgenesh2_kg.2__1257__AT1G70000.1 I 0.672
GLYMA01G04530 Glycine max GLYMA01G04530 I 0.672
MLOC_79329 Hordeum vulgare MLOC_79329 I 0.672
TCM_013524 Theobroma cacao TCM_013524 I 0.672
MLOC_20277 Hordeum vulgare MLOC_20277 I 0.672
GSMUA_Achr5G09240_001 Musa acuminata GSMUA_Achr5G09240_001 I 0.672
GLYMA02G03020 Glycine max GLYMA02G03020 I 0.672
GLYMA08G03330 Glycine max GLYMA08G03330 I 0.672
PRUPE_ppa009283mg Prunus persica PRUPE_ppa009283mg I 0.672
PGSC0003DMG400001913 Solanum tuberosum PGSC0003DMG400001913 I 0.672
Solyc06g071230.2 Solanum lycopersicum Solyc06g071230.2 I 0.672
AT1G70000 Arabidopsis thaliana AT1G70000 I 0.672
Solyc12g008800.1 Solanum lycopersicum Solyc12g008800.1 I 0.672
TCM_010118 Theobroma cacao TCM_010118 I 0.672
Solyc03g113620.2 Solanum lycopersicum Solyc03g113620.2 I 0.672
Solyc04g005100.2 Solanum lycopersicum Solyc04g005100.2 I 0.672
Thhalv10008346m.g Eutrema salsugineum Thhalv10008346m.g I 0.669
Bo8g068220 Brassica oleracea Bo8g068220 I 0.669
Bra016530 Brassica rapa Bra016530 I 0.669
Bostr.7128s0505 Boechera stricta Bostr.7128s0505 I 0.669
ONIVA04G06580 Oryza nivara ONIVA04G06580 I 0.668
BGIOSGA015321 Oryza indica BGIOSGA015321 I 0.668
SELMODRAFT_84280 Selaginella moellendorffii SELMODRAFT_84280 I 0.666
SapurV1A.0138s0010 Salix purpurea SapurV1A.0138s0010 I 0.665
SapurV1A.0161s0200 Salix purpurea SapurV1A.0161s0200 I 0.665
SapurV1A.1673s0010 Salix purpurea SapurV1A.1673s0010 I 0.665
GSMUA_Achr7G06880_001 Musa acuminata GSMUA_Achr7G06880_001 I 0.664
gw1.89.65.1 Physcomitrella patens gw1.89.65.1 I 0.664
OGLUM08G03020 Oryza glumaepatula OGLUM08G03020 I 0.664
ONIVA06G02390 Oryza nivara ONIVA06G02390 I 0.664
LPERR08G03010 Leersia perrieri LPERR08G03010 I 0.664
Eucgr.B00377 Eucalyptus grandis Eucgr.B00377 I 0.664
OB08G13080 Oryza brachyantha OB08G13080 I 0.664
OPUNC08G02750 Oryza punctata OPUNC08G02750 I 0.664
Gorai.009G030900 Gossypium raimondii Gorai.009G030900 I 0.664
OBART08G03010 Oryza barthii OBART08G03010 I 0.664
Solyc08g065380.2 Solanum lycopersicum Solyc08g065380.2 I 0.664
BGIOSGA027987 Oryza indica BGIOSGA027987 I 0.664
ORUFI08G03370 Oryza rufipogon ORUFI08G03370 I 0.664
30147.m014337 Ricinus communis 30147.m014337 I 0.664
OS08G0151000 Oryza sativa OS08G0151000 I 0.664
chr4.CM0004.450.nd Lotus japonicus chr4.CM0004.450.nd I 0.664
29912.m005387 Ricinus communis 29912.m005387 I 0.664
Cla010879 Citrullus lanatus Cla010879 I 0.664
ORGLA08G0023800 Oryza glaberrima ORGLA08G0023800 I 0.664
MTR_6g092540 Medicago truncatula MTR_6g092540 I 0.663
gene11419-v1.0-hybrid Fragaria vesca gene11419-v1.0-hybrid I 0.663
Bra012665 Brassica rapa Bra012665 I 0.663
gene09510-v1.0-hybrid Fragaria vesca gene09510-v1.0-hybrid I 0.663
Bo2g132340 Brassica oleracea Bo2g132340 I 0.663
Thhalv10025432m.g Eutrema salsugineum Thhalv10025432m.g I 0.663
evm.TU.supercontig_2092.1 Carica papaya evm.TU.supercontig_2092.1 I 0.663
MDP0000537549 Malus domestica MDP0000537549 I 0.663
MDP0000875621 Malus domestica MDP0000875621 I 0.663
LjSGA_014616.1 Lotus japonicus LjSGA_014616.1 I 0.663
Bo7g105100 Brassica oleracea Bo7g105100 I 0.663
KUA1 Arabidopsis thaliana AT5G47390 D 0.663
Thhalv10000932m.g Eutrema salsugineum Thhalv10000932m.g I 0.663
Bra022127 Brassica rapa Bra022127 I 0.663
chr2.CM0373.230.nd Lotus japonicus chr2.CM0373.230.nd I 0.663
Carubv10026634m.g Capsella rubella Carubv10026634m.g I 0.663
Pm027228 Prunus mume Pm027228 I 0.663
mgf003276m Mimulus guttatus mgf003276m I 0.663
Bostr.14419s0032 Boechera stricta Bostr.14419s0032 I 0.663
POPTR_0015s08020 Populus trichocarpa POPTR_0015s08020 I 0.663
PRUPE_ppa008425mg Prunus persica PRUPE_ppa008425mg I 0.663
scaffold_800056.1 Arabidopsis lyrata scaffold_800056.1 I 0.663
Ca_12767 Cicer arietinum Ca_12767 I 0.663
Ca_15538 Cicer arietinum Ca_15538 I 0.663
Cagra.10840s0008 Capsella grandiflora Cagra.10840s0008 I 0.663
e_gw1.89.66.1 Physcomitrella patens e_gw1.89.66.1 I 0.663
Cagra.1415s0002 Capsella grandiflora Cagra.1415s0002 I 0.663
Carubv10020813m.g Capsella rubella Carubv10020813m.g I 0.663
PRUPE_ppa010092mg Prunus persica PRUPE_ppa010092mg I 0.662
MDP0000297148 Malus domestica MDP0000297148 I 0.662
MDP0000162533 Malus domestica MDP0000162533 I 0.662
gene21159-v1.0-hybrid Fragaria vesca gene21159-v1.0-hybrid I 0.662
Pm019550 Prunus mume Pm019550 I 0.662
OBART01G05710 Oryza barthii OBART01G05710 I 0.661
MYBS3 Oryza sativa OS10G0561400 I 0.661
OGLUM10G18630 Oryza glumaepatula OGLUM10G18630 I 0.661
Sb01g029020 Sorghum bicolor Sb01g029020 I 0.661
OLONG_012642 Oryza longistaminata OLONG_012642 I 0.661
OLONG_013887 Oryza longistaminata OLONG_013887 I 0.661
Sb03g003270 Sorghum bicolor Sb03g003270 I 0.661
Traes_1DL_8398893D8 Triticum aestivum Traes_1DL_8398893D8 I 0.661
BGIOSGA002232 Oryza indica BGIOSGA002232 I 0.661
Traes_1BL_B7F04D24D Triticum aestivum Traes_1BL_B7F04D24D I 0.661
Traes_1AL_297FBF3A3 Triticum aestivum Traes_1AL_297FBF3A3 I 0.661
Si036696m.g Setaria italica Si036696m.g I 0.661
TRIUR3_06499 Triticum urartu TRIUR3_06499 I 0.661
OS01G0187900 Oryza sativa OS01G0187900 I 0.661
OBART10G18550 Oryza barthii OBART10G18550 I 0.661
Si001941m.g Setaria italica Si001941m.g I 0.661
PK23829.1 Cannabis sativa PK23829.1 D 0.661
ORUFI01G06200 Oryza rufipogon ORUFI01G06200 I 0.661
ONIVA10G21060 Oryza nivara ONIVA10G21060 I 0.661
OB10G25650 Oryza brachyantha OB10G25650 I 0.661
GRMZM5G813892 Zea mays GRMZM5G813892 I 0.661
GRMZM2G400489 Zea mays GRMZM2G400489 I 0.661
LPERR01G05380 Leersia perrieri LPERR01G05380 I 0.661
ONIVA01G06510 Oryza nivara ONIVA01G06510 I 0.661
OMERI08G00440 Oryza meridionalis OMERI08G00440 I 0.661
MLOC_10528 Hordeum vulgare MLOC_10528 I 0.661
LPERR10G14380 Leersia perrieri LPERR10G14380 I 0.661
OPUNC01G05570 Oryza punctata OPUNC01G05570 I 0.661
GRMZM2G034110 Zea mays GRMZM2G034110 I 0.661
Pavir.Ia02215 Panicum virgatum Pavir.Ia02215 I 0.661
Pavir.Ib02319 Panicum virgatum Pavir.Ib02319 I 0.661
BRADI3G33400 Brachypodium distachyon BRADI3G33400 I 0.661
Pavir.Ea00264 Panicum virgatum Pavir.Ea00264 I 0.661
ORGLA10G0136800 Oryza glaberrima ORGLA10G0136800 I 0.661
OPUNC10G16890 Oryza punctata OPUNC10G16890 I 0.661
ORGLA01G0053500 Oryza glaberrima ORGLA01G0053500 I 0.661
OGLUM01G06250 Oryza glumaepatula OGLUM01G06250 I 0.661
ORUFI10G19730 Oryza rufipogon ORUFI10G19730 I 0.661