CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cla008455
(
Citrullus lanatus
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Cla008455
T283190_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK17526.1
M02353_2.00
Cannabis sativa
NNTTATCCAN
NTGGATAANN
PBM
Weirauch et al.(2014)
pTH9588
0.672
0.857
fgenesh1_pg.scaffold_70000111
M02342_2.00
Physcomitrella patens
NNHNATCBN
NVGATNDNN
PBM
Weirauch et al.(2014)
pTH8492
0.672
0.829
KUA1
M02312_2.00
Arabidopsis thaliana
NNTTATCCDN
NHGGATAANN
PBM
Weirauch et al.(2014)
pTH7647
0.663
0.800
KUA1
M07136_2.00
Arabidopsis thaliana
WWHHTTATCCAHWW
WWDTGGATAADDWW
Dap-seq
OMalley et al.(2016)
At5g47390_colamp_a
0.663
0.800
KUA1
M07137_2.00
Arabidopsis thaliana
HHWDYHTTATCCAHW
WDTGGATAADRHWDD
Dap-seq
OMalley et al.(2016)
At5g47390_col_b
0.663
0.800
PK23829.1
M02355_2.00
Cannabis sativa
VTTATCCD
HGGATAAB
PBM
Weirauch et al.(2014)
pTH9592
0.661
0.829
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cla008455
Myb
89
124
VNASEKVGKGDWRGISRNFVKTRTPTQVASHAQKYF
Links
Other
Myb/SANT
family TFs
Other
Citrullus lanatus
TFs
225 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy