Cla010333 (Citrullus lanatus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cla010333 T283207_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB124
M01267_2.00
Arabidopsis thaliana
NNVCGCKCBN

NVGMGCGBNN
PBM
Lambert et al.(2019)
pTH11556
0.804 0.879
MYB88
M07042_2.00
Arabidopsis thaliana
NNNHNACGCKCCDHH

DDHGGMGCGTNDNNN
Dap-seq
OMalley et al.(2016)
MYB88_col_a
0.776 0.846
MYB88
M07043_2.00
Arabidopsis thaliana
NNNACGCTCCHNN

NNDGGAGCGTNNN
Dap-seq
OMalley et al.(2016)
MYB88_colamp_a
0.776 0.846
MYB88
M11038_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB88_01
0.776 0.846
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla010333 Myb 21 66
Cla010333 Myb 72 116

Links

Other Myb/SANT family TFs
Other Citrullus lanatus TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29736.m002013 Ricinus communis 29736.m002013 I 0.863
AMTR_s00010p00252990 Amborella trichopoda AMTR_s00010p00252990 I 0.718
Aquca_002_00543 Aquilegia coerulea Aquca_002_00543 I 0.797
BGIOSGA026188 Oryza indica BGIOSGA026188 I 0.708
Bo2g136560 Brassica oleracea Bo2g136560 I 0.785
Bo5g019500 Brassica oleracea Bo5g019500 I 0.786
Bo7g080730 Brassica oleracea Bo7g080730 I 0.776
Bostr.0556s0099 Boechera stricta Bostr.0556s0099 I 0.776
Bostr.13671s0016 Boechera stricta Bostr.13671s0016 I 0.819
Bra019658 Brassica rapa Bra019658 I 0.786
Bra024804 Brassica rapa Bra024804 I 0.776
Cagra.0534s0022 Capsella grandiflora Cagra.0534s0022 I 0.755
Cagra.3501s0066 Capsella grandiflora Cagra.3501s0066 I 0.819
Carubv10011707m.g Capsella rubella Carubv10011707m.g I 0.819
Carubv10017119m.g Capsella rubella Carubv10017119m.g I 0.755
cassava35260.valid.m1 Manihot esculenta cassava35260.valid.m1 I 0.843
cassava39089.m1 Manihot esculenta cassava39089.m1 I 0.843
Ca_18779 Cicer arietinum Ca_18779 I 0.843
Ciclev10031405m.g Citrus clementina Ciclev10031405m.g I 0.836
Cucsa.285270 Cucumis sativus Cucsa.285270 I 0.909
Eucgr.B03417 Eucalyptus grandis Eucgr.B03417 I 0.848
Eucgr.G02522 Eucalyptus grandis Eucgr.G02522 I 0.792
evm.TU.supercontig_183.27 Carica papaya evm.TU.supercontig_183.27 I 0.835
FLP Arabidopsis lyrata fgenesh2_kg.1__1561__AT1G14350.1 I 0.779
GLYMA01G05190 Glycine max GLYMA01G05190 I 0.843
GLYMA02G02310 Glycine max GLYMA02G02310 I 0.843
GLYMA08G40950 Glycine max GLYMA08G40950 I 0.796
GLYMA18G16040 Glycine max GLYMA18G16040 I 0.805
Gorai.005G139500 Gossypium raimondii Gorai.005G139500 I 0.835
Gorai.013G083300 Gossypium raimondii Gorai.013G083300 I 0.809
GRMZM2G064630 Zea mays GRMZM2G064630 I 0.690
GSMUA_Achr10G18880_001 Musa acuminata GSMUA_Achr10G18880_001 I 0.712
Lus10012847.g Linum usitatissimum Lus10012847.g I 0.831
Lus10030494.g Linum usitatissimum Lus10030494.g I 0.831
MDP0000165523 Malus domestica MDP0000165523 I 0.843
MDP0000210970 Malus domestica MDP0000210970 I 0.858
mgf009409m Mimulus guttatus mgf009409m I 0.796
mgf021059m Mimulus guttatus mgf021059m N 0.666
MTR_5g038910 Medicago truncatula MTR_5g038910 I 0.843
MTR_8g468380 Medicago truncatula MTR_8g468380 I 0.833
MYB124 Arabidopsis thaliana AT1G14350 D 0.804
MYB88 Arabidopsis lyrata fgenesh2_kg.5__181__AT2G02820.2 I 0.776
MYB88 Arabidopsis thaliana AT2G02820 D 0.776
OB07G28520 Oryza brachyantha OB07G28520 I 0.703
OBART07G22930 Oryza barthii OBART07G22930 I 0.708
OGLUM07G22980 Oryza glumaepatula OGLUM07G22980 I 0.708
OPUNC07G21540 Oryza punctata OPUNC07G21540 I 0.699
orange1.1g044977m.g Citrus sinensis orange1.1g044977m.g I 0.836
ORGLA07G0179200 Oryza glaberrima ORGLA07G0179200 I 0.708
ORUFI07G24080 Oryza rufipogon ORUFI07G24080 I 0.708
OS07G0627300 Oryza sativa OS07G0627300 I 0.708
Pavir.Bb03405 Panicum virgatum Pavir.Bb03405 I 0.727
Pavir.J36475 Panicum virgatum Pavir.J36475 I 0.672
PDK_20s1473891g001 Phoenix dactylifera PDK_20s1473891g001 I 0.689
PGSC0003DMG400002828 Solanum tuberosum PGSC0003DMG400002828 I 0.733
PGSC0003DMG400025612 Solanum tuberosum PGSC0003DMG400025612 I 0.844
PGSC0003DMG400026758 Solanum tuberosum PGSC0003DMG400026758 I 0.733
PK05123.1 Cannabis sativa PK05123.1 I 0.852
Pm006532 Prunus mume Pm006532 I 0.835
POPTR_0008s14790 Populus trichocarpa POPTR_0008s14790 I 0.882
POPTR_0010s10310 Populus trichocarpa POPTR_0010s10310 I 0.843
PRUPE_ppa017536mg Prunus persica PRUPE_ppa017536mg I 0.835
SapurV1A.0062s0030 Salix purpurea SapurV1A.0062s0030 I 0.843
SapurV1A.0200s0020 Salix purpurea SapurV1A.0200s0020 I 0.882
Sb02g040050 Sorghum bicolor Sb02g040050 I 0.690
Si029124m.g Setaria italica Si029124m.g I 0.697
Solyc04g005710.1 Solanum lycopersicum Solyc04g005710.1 I 0.766
Solyc05g007160.2 Solanum lycopersicum Solyc05g007160.2 I 0.844
TCM_011776 Theobroma cacao TCM_011776 I 0.813
Thhalv10004109m.g Eutrema salsugineum Thhalv10004109m.g I 0.793
Thhalv10007659m.g Eutrema salsugineum Thhalv10007659m.g I 0.786
Traes_2AS_1161E1D2E Triticum aestivum Traes_2AS_1161E1D2E I 0.683
Traes_2BS_F1B450FA4 Triticum aestivum Traes_2BS_F1B450FA4 I 0.699
Traes_2DS_9430AAD52 Triticum aestivum Traes_2DS_9430AAD52 I 0.683
VIT_01s0026g01910 Vitis vinifera VIT_01s0026g01910 I 0.828