Cla013306 (Citrullus lanatus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cla013306 T283234_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.698 0.796
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.698 0.796
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.685 0.774
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.678 0.785
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.678 0.785
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.678 0.785
PK07741.1
M01277_2.00 		Cannabis sativa
HAMCBRHHN
NDDYVGKTD		 PBM
Lambert et al.(2019)
pTH11469 		0.677 0.742
OS02G0187700
M02327_2.00 		Oryza sativa
NTAMCKGTHN
NDACMGKTAN		 PBM
Weirauch et al.(2014)
pTH8645 		0.675 0.731
MYB1
M07068_2.00 		Arabidopsis thaliana
HDNNDNHWHWAACSGYHWH
DWDRCSGTTWDWDNHNNHD		 Dap-seq
OMalley et al.(2016)
MYB1_col_a 		0.674 0.720
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.674 0.785
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla013306 Myb 12 58
Cla013306 Myb 64 109

Links

Other Myb/SANT family TFs
Other Citrullus lanatus TFs

196 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gene26289-v1.0-hybrid Fragaria vesca gene26289-v1.0-hybrid I 0.803
Pm021211 Prunus mume Pm021211 I 0.772
PRUPE_ppa023154mg Prunus persica PRUPE_ppa023154mg I 0.772
Cucsa.244650 Cucumis sativus Cucsa.244650 I 0.770
PK16550.1 Cannabis sativa PK16550.1 I 0.762
Ciclev10029124m.g Citrus clementina Ciclev10029124m.g I 0.759
orange1.1g040502m.g Citrus sinensis orange1.1g040502m.g I 0.759
Gorai.012G149000 Gossypium raimondii Gorai.012G149000 I 0.757
29801.m003096 Ricinus communis 29801.m003096 I 0.756
MDP0000187872 Malus domestica MDP0000187872 I 0.751
Eucgr.E02958 Eucalyptus grandis Eucgr.E02958 I 0.748
cassava8939.m1 Manihot esculenta cassava8939.m1 I 0.741
Lus10014103.g Linum usitatissimum Lus10014103.g I 0.737
BRADI4G08220 Brachypodium distachyon BRADI4G08220 I 0.737
Gorai.005G234900 Gossypium raimondii Gorai.005G234900 I 0.735
Solyc09g011780.2 Solanum lycopersicum Solyc09g011780.2 I 0.729
PGSC0003DMG400020338 Solanum tuberosum PGSC0003DMG400020338 I 0.729
Cucsa.352560 Cucumis sativus Cucsa.352560 I 0.723
Cla020946 Citrullus lanatus Cla020946 I 0.723
GLYMA14G06870 Glycine max GLYMA14G06870 I 0.722
Aquca_083_00054 Aquilegia coerulea Aquca_083_00054 I 0.718
VIT_03s0180g00210 Vitis vinifera VIT_03s0180g00210 I 0.718
evm.TU.supercontig_6.98 Carica papaya evm.TU.supercontig_6.98 I 0.717
MDP0000284922 Malus domestica MDP0000284922 I 0.717
Cucsa.395890 Cucumis sativus Cucsa.395890 I 0.713
Cla022947 Citrullus lanatus Cla022947 I 0.713
PK17282.1 Cannabis sativa PK17282.1 I 0.711
mgf025567m Mimulus guttatus mgf025567m I 0.710
SapurV1A.0262s0270 Salix purpurea SapurV1A.0262s0270 I 0.709
SapurV1A.0709s0060 Salix purpurea SapurV1A.0709s0060 I 0.709
cassava47374.m1 Manihot esculenta cassava47374.m1 I 0.708
evm.TU.supercontig_19.238 Carica papaya evm.TU.supercontig_19.238 I 0.708
MDP0000203733 Malus domestica MDP0000203733 I 0.707
MDP0000478512 Malus domestica MDP0000478512 I 0.707
Bostr.27895s0157 Boechera stricta Bostr.27895s0157 I 0.707
MDP0000319124 Malus domestica MDP0000319124 I 0.707
evm.TU.supercontig_21.145 Carica papaya evm.TU.supercontig_21.145 I 0.705
Aquca_007_00776 Aquilegia coerulea Aquca_007_00776 I 0.705
30170.m013698 Ricinus communis 30170.m013698 I 0.705
mgf014089m Mimulus guttatus mgf014089m I 0.704
GRMZM2G050550 Zea mays GRMZM2G050550 I 0.704
Gorai.002G009300 Gossypium raimondii Gorai.002G009300 I 0.703
VIT_08s0007g01540 Vitis vinifera VIT_08s0007g01540 I 0.702
PK12959.1 Cannabis sativa PK12959.1 I 0.702
Cla018417 Citrullus lanatus Cla018417 I 0.702
Bra011749 Brassica rapa Bra011749 I 0.702
MTR_4g019370 Medicago truncatula MTR_4g019370 I 0.702
Cucsa.066910 Cucumis sativus Cucsa.066910 I 0.702
Bo1g004900 Brassica oleracea Bo1g004900 I 0.702
Solyc02g092930.1 Solanum lycopersicum Solyc02g092930.1 I 0.699
Gorai.007G218100 Gossypium raimondii Gorai.007G218100 I 0.699
27798.m000612 Ricinus communis 27798.m000612 I 0.699
PGSC0003DMG400024983 Solanum tuberosum PGSC0003DMG400024983 I 0.699
cassava1242.valid.m1 Manihot esculenta cassava1242.valid.m1 I 0.699
GSMUA_Achr6G33470_001 Musa acuminata GSMUA_Achr6G33470_001 I 0.699
GSMUA_Achr5G28780_001 Musa acuminata GSMUA_Achr5G28780_001 I 0.699
GLYMA14G09540 Glycine max GLYMA14G09540 I 0.698
Carubv10023692m.g Capsella rubella Carubv10023692m.g I 0.698
AtMYB70 Arabidopsis thaliana AT2G23290 D 0.698
AtMYB70 Arabidopsis lyrata fgenesh2_kg.4__260__AT2G23290.1 I 0.698
Thhalv10000438m.g Eutrema salsugineum Thhalv10000438m.g I 0.698
GLYMA04G04490 Glycine max GLYMA04G04490 I 0.697
MDP0000807341 Malus domestica MDP0000807341 I 0.697
PRUPE_ppa008979mg Prunus persica PRUPE_ppa008979mg I 0.696
MDP0000463846 Malus domestica MDP0000463846 I 0.696
Pm005332 Prunus mume Pm005332 I 0.696
POPTR_0009s09890 Populus trichocarpa POPTR_0009s09890 I 0.696
TCM_042629 Theobroma cacao TCM_042629 I 0.695
TCM_007138 Theobroma cacao TCM_007138 I 0.695
AtMYB1 Arabidopsis lyrata scaffold_301043.1 I 0.695
Thhalv10021963m.g Eutrema salsugineum Thhalv10021963m.g I 0.695
Gorai.011G278500 Gossypium raimondii Gorai.011G278500 I 0.695
Solyc05g052850.2 Solanum lycopersicum Solyc05g052850.2 I 0.695
PGSC0003DMG400027190 Solanum tuberosum PGSC0003DMG400027190 I 0.695
Ciclev10012003m.g Citrus clementina Ciclev10012003m.g I 0.694
GSMUA_Achr9G03720_001 Musa acuminata GSMUA_Achr9G03720_001 I 0.694
Lus10028250.g Linum usitatissimum Lus10028250.g I 0.694
Lus10040239.g Linum usitatissimum Lus10040239.g I 0.694
orange1.1g017566m.g Citrus sinensis orange1.1g017566m.g I 0.694
mgf018580m Mimulus guttatus mgf018580m I 0.692
Ciclev10031463m.g Citrus clementina Ciclev10031463m.g I 0.692
orange1.1g012494m.g Citrus sinensis orange1.1g012494m.g I 0.692
OMERI08G05160 Oryza meridionalis OMERI08G05160 I 0.691
ORUFI09G00360 Oryza rufipogon ORUFI09G00360 I 0.691
ORGLA09G0002900 Oryza glaberrima ORGLA09G0002900 I 0.691
OS09G0106700 Oryza sativa OS09G0106700 I 0.691
Pm018862 Prunus mume Pm018862 I 0.691
OGLUM09G00340 Oryza glumaepatula OGLUM09G00340 I 0.691
BGIOSGA030245 Oryza indica BGIOSGA030245 I 0.691
OB09G10200 Oryza brachyantha OB09G10200 I 0.691
OBART09G00310 Oryza barthii OBART09G00310 I 0.691
ONIVA09G00250 Oryza nivara ONIVA09G00250 I 0.691
OPUNC12G06260 Oryza punctata OPUNC12G06260 I 0.691
gene20888-v1.0-hybrid Fragaria vesca gene20888-v1.0-hybrid I 0.691
POPTR_0007s10490 Populus trichocarpa POPTR_0007s10490 I 0.691
TCM_000696 Theobroma cacao TCM_000696 I 0.690
SELMODRAFT_103999 Selaginella moellendorffii SELMODRAFT_103999 I 0.690
SELMODRAFT_99462 Selaginella moellendorffii SELMODRAFT_99462 I 0.690
Gorai.007G055600 Gossypium raimondii Gorai.007G055600 I 0.690
PGSC0003DMG400003316 Solanum tuberosum PGSC0003DMG400003316 I 0.689
Solyc04g078420.1 Solanum lycopersicum Solyc04g078420.1 I 0.689
GSMUA_AchrUn_randomG01280_001 Musa acuminata GSMUA_AchrUn_randomG01280_001 I 0.688
Si032789m.g Setaria italica Si032789m.g I 0.687
GLYMA02G42030 Glycine max GLYMA02G42030 I 0.687
Pavir.Ba03084 Panicum virgatum Pavir.Ba03084 I 0.687
Sb02g013010 Sorghum bicolor Sb02g013010 I 0.687
Carubv10013882m.g Capsella rubella Carubv10013882m.g I 0.686
Cagra.2515s0014 Capsella grandiflora Cagra.2515s0014 I 0.686
Cagra.1232s0025 Capsella grandiflora Cagra.1232s0025 I 0.685
Thhalv10025742m.g Eutrema salsugineum Thhalv10025742m.g I 0.685
Carubv10007638m.g Capsella rubella Carubv10007638m.g I 0.685
orange1.1g022144m.g Citrus sinensis orange1.1g022144m.g I 0.685
Ciclev10001979m.g Citrus clementina Ciclev10001979m.g I 0.685
mgf006151m Mimulus guttatus mgf006151m I 0.685
MYB73 Arabidopsis thaliana AT4G37260 D 0.685
Bostr.7867s1585 Boechera stricta Bostr.7867s1585 I 0.685
Eucgr.J00250 Eucalyptus grandis Eucgr.J00250 I 0.684
mgf002573m Mimulus guttatus mgf002573m I 0.683
SapurV1A.0167s0310 Salix purpurea SapurV1A.0167s0310 I 0.683
SapurV1A.0919s0160 Salix purpurea SapurV1A.0919s0160 I 0.683
SapurV1A.1934s0020 Salix purpurea SapurV1A.1934s0020 I 0.683
POPTR_0014s02260 Populus trichocarpa POPTR_0014s02260 I 0.683
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I 0.683
POPTR_0002s12410 Populus trichocarpa POPTR_0002s12410 I 0.683
gw1.10.6.1 Physcomitrella patens gw1.10.6.1 I 0.682
LPERR09G00910 Leersia perrieri LPERR09G00910 I 0.682
Traes_5BL_486D0D865 Triticum aestivum Traes_5BL_486D0D865 I 0.682
MLOC_64817 Hordeum vulgare MLOC_64817 I 0.682
GRMZM2G087955 Zea mays GRMZM2G087955 I 0.682
Traes_5DL_92CBBE968 Triticum aestivum Traes_5DL_92CBBE968 I 0.682
Bo4g151410 Brassica oleracea Bo4g151410 I 0.681
Bra032176 Brassica rapa Bra032176 I 0.681
Carubv10027659m.g Capsella rubella Carubv10027659m.g I 0.678
Bo3g153550 Brassica oleracea Bo3g153550 I 0.678
MYB44 Arabidopsis thaliana AT5G67300 D 0.678
Bra012149 Brassica rapa Bra012149 I 0.678
cassava7558.valid.m1 Manihot esculenta cassava7558.valid.m1 I 0.678
ATMYBR1 Arabidopsis lyrata scaffold_803378.1 I 0.678
AMTR_s00006p00225600 Amborella trichopoda AMTR_s00006p00225600 I 0.678
Bo7g063830 Brassica oleracea Bo7g063830 I 0.678
Cagra.0342s0017 Capsella grandiflora Cagra.0342s0017 I 0.678
PK07741.1 Cannabis sativa PK07741.1 D 0.677
Sb03g039950 Sorghum bicolor Sb03g039950 I 0.677
PGSC0003DMG400007994 Solanum tuberosum PGSC0003DMG400007994 I 0.677
GLYMA03G15810 Glycine max GLYMA03G15810 I 0.677
AMTR_s00029p00183640 Amborella trichopoda AMTR_s00029p00183640 I 0.677
GLYMA01G26650 Glycine max GLYMA01G26650 I 0.677
Pavir.J13677 Panicum virgatum Pavir.J13677 I 0.677
GRMZM2G169316 Zea mays GRMZM2G169316 I 0.677
Si001686m.g Setaria italica Si001686m.g I 0.677
Pavir.Ea03398 Panicum virgatum Pavir.Ea03398 I 0.677
Solyc04g079360.1 Solanum lycopersicum Solyc04g079360.1 I 0.677
Eucgr.H02226 Eucalyptus grandis Eucgr.H02226 I 0.677
GSMUA_Achr1G09750_001 Musa acuminata GSMUA_Achr1G09750_001 I 0.675
orange1.1g021071m.g Citrus sinensis orange1.1g021071m.g I 0.675
MLOC_7426 Hordeum vulgare MLOC_7426 I 0.675
BRADI3G06470 Brachypodium distachyon BRADI3G06470 I 0.675
ORGLA02G0061500 Oryza glaberrima ORGLA02G0061500 I 0.675
OGLUM02G06640 Oryza glumaepatula OGLUM02G06640 I 0.675
Bra010593 Brassica rapa Bra010593 I 0.675
OPUNC02G05820 Oryza punctata OPUNC02G05820 I 0.675
cassava43120.valid.m1 Manihot esculenta cassava43120.valid.m1 I 0.675
OS02G0187700 Oryza sativa OS02G0187700 D 0.675
OMERI02G07700 Oryza meridionalis OMERI02G07700 I 0.675
ORUFI02G06760 Oryza rufipogon ORUFI02G06760 I 0.675
ONIVA02G08210 Oryza nivara ONIVA02G08210 I 0.675
Ciclev10026107m.g Citrus clementina Ciclev10026107m.g I 0.675
Gorai.006G179700 Gossypium raimondii Gorai.006G179700 I 0.674
TCM_021796 Theobroma cacao TCM_021796 I 0.674
PRUPE_ppa006851mg Prunus persica PRUPE_ppa006851mg I 0.674
PK28565.1 Cannabis sativa PK28565.1 D 0.674
Pm002576 Prunus mume Pm002576 I 0.674
MYB1 Arabidopsis thaliana AT3G09230 D 0.674
MTR_6g015455 Medicago truncatula MTR_6g015455 I 0.673
GSMUA_Achr8G25220_001 Musa acuminata GSMUA_Achr8G25220_001 I 0.672
SELMODRAFT_77255 Selaginella moellendorffii SELMODRAFT_77255 I 0.671
SapurV1A.0708s0130 Salix purpurea SapurV1A.0708s0130 I 0.671
SELMODRAFT_113522 Selaginella moellendorffii SELMODRAFT_113522 I 0.671
cassava2215.valid.m1 Manihot esculenta cassava2215.valid.m1 I 0.669
Eucgr.F00002 Eucalyptus grandis Eucgr.F00002 I 0.668
e_gw1.72.10.1 Physcomitrella patens e_gw1.72.10.1 I 0.668
e_gw1.53.214.1 Physcomitrella patens e_gw1.53.214.1 I 0.668
POPTR_0005s18620 Populus trichocarpa POPTR_0005s18620 I 0.666
29970.m000987 Ricinus communis 29970.m000987 I 0.666
GLYMA17G35620 Glycine max GLYMA17G35620 I 0.666
MTR_5g082910 Medicago truncatula MTR_5g082910 I 0.665
TRAES3BF039800050CFD_g Triticum aestivum TRAES3BF039800050CFD_g I 0.664
MLOC_10322 Hordeum vulgare MLOC_10322 I 0.664
Lus10010238.g Linum usitatissimum Lus10010238.g I 0.664
chr2.CM0250.240.nd Lotus japonicus chr2.CM0250.240.nd I 0.663
GLYMA11G05550 Glycine max GLYMA11G05550 I 0.663
MDP0000275800 Malus domestica MDP0000275800 I 0.662
Thhalv10004676m.g Eutrema salsugineum Thhalv10004676m.g I 0.661
gene00185-v1.0-hybrid Fragaria vesca gene00185-v1.0-hybrid I 0.661
SapurV1A.0339s0020 Salix purpurea SapurV1A.0339s0020 I 0.661
Bostr.0568s0154 Boechera stricta Bostr.0568s0154 I 0.661