Cmyd_10002843 (Chelonia mydas)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cmyd_10002843 T283348_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Mybl1
M00180_2.00
Mus musculus
HAACBGHHN

NDDCVGTTD
PBM
Badis et al.(2009)
Mybl1_1717
0.669 0.742
MYBL1
M03349_2.00
Homo sapiens
BVGTTKAACBGY

RCVGTTMAACBV
SELEX
Jolma et al.(2013)
MYBL1_1
0.669 0.742
MYBL1
M03350_2.00
Homo sapiens
RMVGTTAACGGT

ACCGTTAACBKY
SELEX
Jolma et al.(2013)
MYBL1_2
0.669 0.742
MYBL1
M03351_2.00
Homo sapiens
NHRACCGTTWN

NWAACGGTYDN
SELEX
Jolma et al.(2013)
MYBL1_3
0.669 0.742
MYBL1
M03352_2.00
Homo sapiens
HAACSGHHHHAACBGHC

GDCVGTTDDDDCSGTTD
SELEX
Jolma et al.(2013)
MYBL1_4
0.669 0.742
Mybl1
M09262_2.00
Mus musculus
BBNBYAACBGCCNSB

VSNGGCVGTTRVNVV
Misc
Kulakovskiy et al.(2013)
MYBA_MOUSE.H11MO.0.C
0.669 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10002843 Myb 11 71
Cmyd_10002843 Myb 113 159
Cmyd_10002843 Myb 165 211
Cmyd_10002843 Myb 217 262

Links

Other Myb/SANT family TFs
Other Chelonia mydas TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MYBL1 Pan troglodytes ENSPTRG00000020308 I 0.669
Mybl1 Rattus norvegicus ENSRNOG00000021669 I 0.669
ENSPSIG00000011935 Pelodiscus sinensis ENSPSIG00000011935 I 0.669
ENSPPYG00000018640 Pongo abelii ENSPPYG00000018640 I 0.669
MYBL1 Oryctolagus cuniculus ENSOCUG00000015184 I 0.669
MYBL1 Otolemur garnettii ENSOGAG00000004344 I 0.669
MYBL1 Sorex araneus ENSSARG00000006938 I 0.669
ENSSHAG00000010559 Sarcophilus harrisii ENSSHAG00000010559 I 0.669
ENSP00000385360 Macaca fascicularis ENSP00000385360 I 0.669
Myotis_brandtii_MYBL1_10031628 Myotis brandtii Myotis_brandtii_MYBL1_10031628 I 0.669
MYBL1 Vicugna pacos ENSVPAG00000004194 I 0.669
MYBL1 Tursiops truncatus ENSTTRG00000017138 I 0.669
ENSSTOG00000006634 Ictidomys tridecemlineatus ENSSTOG00000006634 I 0.669
ENSAMEG00000012401 Ailuropoda melanoleuca ENSAMEG00000012401 I 0.669
MYBL1 Ornithorhynchus anatinus ENSOANG00000002308 I 0.669
MYBL1 Dasypus novemcinctus ENSDNOG00000016860 I 0.669
MYBL1 Equus caballus ENSECAG00000015959 I 0.669
ENSCSAG00000014195 Chlorocebus sabaeus ENSCSAG00000014195 I 0.669
MYBL1 Cavia porcellus ENSCPOG00000007578 I 0.669
MYBL1 Canis familiaris ENSCAFG00000007344 I 0.669
MYBL1 Callithrix jacchus ENSCJAG00000004466 I 0.669
MYBL1 Felis catus ENSFCAG00000031398 I 0.669
MYBL1 Homo sapiens ENSG00000185697 D 0.669
MYBL1 Macaca mulatta ENSMMUG00000013974 I 0.669
MYBL1 Monodelphis domestica ENSMODG00000007964 I 0.669
Mybl1 Mus musculus ENSMUSG00000025912 D 0.669
MYBL1 Myotis lucifugus ENSMLUG00000003166 I 0.669
MYBL1 Gorilla gorilla ENSGGOG00000003892 I 0.669
MYBL1 Loxodonta africana ENSLAFG00000004821 I 0.669
ENSOARG00000017663 Ovis aries ENSOARG00000017663 I 0.667
Alligator_sinensis_CCG001232.1 Alligator sinensis Alligator_sinensis_CCG001232.1 I 0.661