CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gfo_R005427
(
Geospiza fortis
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Gfo_R005427
T283388_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Mybl2
M00807_2.00
Mus musculus
HAACSGHYN
NRDCSGTTD
PBM
Weirauch et al.(2013)
pTH3712
0.851
0.921
MYBL2
M03345_2.00
Homo sapiens
RDMSGTTAACSGTT
AACSGTTAACSKHY
SELEX
Jolma et al.(2013)
MYBL2_1
0.851
0.921
MYBL2
M03346_2.00
Homo sapiens
RCCGTTAVRACCGTTA
TAACGGTYBTAACGGY
SELEX
Jolma et al.(2013)
MYBL2_2
0.851
0.921
MYBL2
M03347_2.00
Homo sapiens
NNRACCGTTWN
NWAACGGTYNN
SELEX
Jolma et al.(2013)
MYBL2_3
0.851
0.921
MYBL2
M03348_2.00
Homo sapiens
RDCCGTTWAACBGHY
RDCVGTTWAACGGHY
SELEX
Jolma et al.(2013)
MYBL2_4
0.851
0.921
MYBL2
M05561_2.00
Homo sapiens
NWAACSGTYDN
NHRACSGTTWN
SELEX
Yin et al.(2017)
MYBL2_eDBD_HT-SELEX
0.851
0.921
MYBL2
M09600_2.00
Homo sapiens
NHAACNGHYN
NRDCNGTTDN
Misc
Heinz et al.(2010)
Hela-BMYB_GSE27030
0.851
0.921
MYBL2
M05562_2.00
Homo sapiens
NHRACSGTYDN
NHRACSGTYDN
SELEX
Yin et al.(2017)
MYBL2_eDBD_Methyl-HT-SELEX
0.851
0.921
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gfo_R005427
Myb
24
70
KVKWTPEEDEQLKMLVSHYGQNDWKFLASHFPNRSDQQCQYRWLRVL
Gfo_R005427
Myb
76
122
KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHL
Gfo_R005427
Myb
128
173
KSSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTI
Links
Other
Myb/SANT
family TFs
Other
Geospiza fortis
TFs
63 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy