CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pm011812
(
Prunus mume
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pm011812
T283517_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Gam1
M02703_2.00
Hordeum vulgare
NVYAACSGMC
GKCSGTTRBN
SELEX
Mathelier et al.(2014)
MA0034.1
0.782
0.815
Gam1
M11061_2.00
Hordeum vulgare
YAACSRHM
KDYSGTTR
Transfac
Matys et al.(2006)
P$GAMYB_01
0.782
0.815
GAM1_ORYSI
M11055_2.00
Oryza sativa
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$GAMYB_Q2
0.765
0.802
myb.Ph3
M02704_2.00
Petunia x hybrida
WAACNGTYW
WRACNGTTW
SELEX
Mathelier et al.(2014)
MA0054.1
0.761
0.877
myb.Ph3
M11070_2.00
Petunia x hybrida
RTAACSGTTTYHW
WDRAAACSGTTAY
Transfac
Matys et al.(2006)
P$MYBPH3_01
0.761
0.877
myb.Ph3
M11071_2.00
Petunia x hybrida
STAACTAACTHHH
DDDAGTTAGTTAS
Transfac
Matys et al.(2006)
P$MYBPH3_02
0.761
0.877
Q9FR42_TOBAC
M11076_2.00
Nicotiana tabacum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBAS1_01
0.756
0.864
MYB101
M07051_2.00
Arabidopsis thaliana
NWHHNWAACCGWWHH
DDWWCGGTTWNDDWN
Dap-seq
OMalley et al.(2016)
MYB101_col_a
0.751
0.864
MYB101
M07052_2.00
Arabidopsis thaliana
DHHHVTAACYGWHWN
NWDWCRGTTABDDDH
Dap-seq
OMalley et al.(2016)
MYB101_colamp_a
0.751
0.864
MYB33
M02306_2.00
Arabidopsis thaliana
HAACNRHHNN
NNDDYNGTTD
PBM
Weirauch et al.(2014)
pTH8204
0.719
0.790
MYB33
M07120_2.00
Arabidopsis thaliana
NTAACYGWHWH
DWDWCRGTTAN
Dap-seq
OMalley et al.(2016)
MYB33_col_a
0.719
0.790
ATMYB65
M01076_2.00
Arabidopsis thaliana
HAACNRHHN
NDDYNGTTD
PBM
Sullivan et al.(2014)
pTH7084
0.706
0.778
ATMYB65
M07076_2.00
Arabidopsis thaliana
DHHNTAACBGHMW
WKDCVGTTANDDH
Dap-seq
OMalley et al.(2016)
MYB65_col200_a
0.706
0.778
ATMYB65
M07077_2.00
Arabidopsis thaliana
NTAACYGHMWHNDHN
NDHNDWKDCRGTTAN
Dap-seq
OMalley et al.(2016)
MYB65_colamp_a
0.706
0.778
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pm011812
Myb
1
36
MEYVRKHGEGNWNAVQRNSGLNRCGKSCRLRWANHL
Pm011812
Myb
42
87
KGAFSPDEERLILELHAKYGNKWARMASQLPGRTDNEIKNYWNTRV
Links
Other
Myb/SANT
family TFs
Other
Prunus mume
TFs
235 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy