CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pm012272
(
Prunus mume
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pm012272
T283518_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB46
M00877_2.00
Arabidopsis thaliana
NAMCNDHHN
NDDHNGKTN
PBM
Franco-Zorrilla et al.(2014)
MYB46
0.728
0.911
MYB46
M11046_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATMYB46_Q6
0.728
0.911
MYB83
M01073_2.00
Arabidopsis thaliana
YACCHACC
GGTDGGTR
PBM
Sullivan et al.(2014)
pTH7140
0.715
0.873
MYB83
M07066_2.00
Arabidopsis thaliana
YCACCAACHNH
DNDGTTGGTGR
Dap-seq
OMalley et al.(2016)
MYB83_col_a
0.715
0.873
MYB83
M07067_2.00
Arabidopsis thaliana
NCACCWAMCDNHNNN
NNNDNHGKTWGGTGN
Dap-seq
OMalley et al.(2016)
MYB83_colamp_a
0.715
0.873
MYB61
M07002_2.00
Arabidopsis thaliana
HNYAMCHACCDNHNH
DNDNHGGTDGKTRND
Dap-seq
OMalley et al.(2016)
MYB61_col_a
0.666
0.759
MYB61
M07003_2.00
Arabidopsis thaliana
NHNYACCWAMCDH
DHGKTWGGTRNDN
Dap-seq
OMalley et al.(2016)
MYB61_colamp_a
0.666
0.759
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pm012272
Myb
3
36
YMINNGQGCWSDVARNAGLQRCGKSCRLRWINYL
Pm012272
Myb
42
87
RGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTI
Links
Other
Myb/SANT
family TFs
Other
Prunus mume
TFs
129 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
LjSGA_026563.1
Lotus japonicus
LjSGA_026563.1
I
0.897
MYB83
Vitis vinifera
VIT_13s0064g00960
I
0.849
cassava30676.valid.m1
Manihot esculenta
cassava30676.valid.m1
I
0.823
MDP0000722954
Malus domestica
MDP0000722954
I
0.823
PRUPE_ppa009566mg
Prunus persica
PRUPE_ppa009566mg
I
0.823
MDP0000204495
Malus domestica
MDP0000204495
I
0.823
VIT_06s0004g02110
Vitis vinifera
VIT_06s0004g02110
I
0.823
Cla008683
Citrullus lanatus
Cla008683
I
0.814
Cucsa.065530
Cucumis sativus
Cucsa.065530
I
0.814
cassava5203.m1
Manihot esculenta
cassava5203.m1
I
0.814
PK13930.1
Cannabis sativa
PK13930.1
I
0.813
Lus10031281.g
Linum usitatissimum
Lus10031281.g
I
0.810
GLYMA12G06180
Glycine max
GLYMA12G06180
I
0.806
Cucsa.195180
Cucumis sativus
Cucsa.195180
I
0.805
Cla017541
Citrullus lanatus
Cla017541
I
0.805
GLYMA15G03920
Glycine max
GLYMA15G03920
I
0.801
GLYMA13G41470
Glycine max
GLYMA13G41470
I
0.801
MTR_4g065017
Medicago truncatula
MTR_4g065017
I
0.798
GLYMA11G14200
Glycine max
GLYMA11G14200
I
0.798
POPTR_0009s05860
Populus trichocarpa
POPTR_0009s05860
I
0.798
SapurV1A.0534s0230
Salix purpurea
SapurV1A.0534s0230
I
0.798
orange1.1g021164m.g
Citrus sinensis
orange1.1g021164m.g
I
0.793
evm.TU.supercontig_84.59
Carica papaya
evm.TU.supercontig_84.59
I
0.793
Eucgr.B03684
Eucalyptus grandis
Eucgr.B03684
I
0.793
Ciclev10017658m.g
Citrus clementina
Ciclev10017658m.g
I
0.793
gene14666-v1.0-hybrid
Fragaria vesca
gene14666-v1.0-hybrid
I
0.787
POPTR_0001s26590
Populus trichocarpa
POPTR_0001s26590
I
0.783
SapurV1A.0925s0070
Salix purpurea
SapurV1A.0925s0070
I
0.783
Aquca_014_00829
Aquilegia coerulea
Aquca_014_00829
I
0.763
TCM_005885
Theobroma cacao
TCM_005885
I
0.763
Lus10027369.g
Linum usitatissimum
Lus10027369.g
I
0.763
Gorai.013G251100
Gossypium raimondii
Gorai.013G251100
I
0.760
Gorai.001G138800
Gossypium raimondii
Gorai.001G138800
I
0.760
OB12G21380
Oryza brachyantha
OB12G21380
I
0.757
GSMUA_AchrUn_randomG21080_001
Musa acuminata
GSMUA_AchrUn_randomG21080_001
I
0.756
AMTR_s00022p00252530
Amborella trichopoda
AMTR_s00022p00252530
I
0.756
Lus10002559.g
Linum usitatissimum
Lus10002559.g
I
0.755
POPTR_0001s27430
Populus trichocarpa
POPTR_0001s27430
I
0.753
POPTR_0009s06630
Populus trichocarpa
POPTR_0009s06630
I
0.753
orange1.1g019619m.g
Citrus sinensis
orange1.1g019619m.g
I
0.753
GLYMA13G07020
Glycine max
GLYMA13G07020
I
0.753
Ciclev10033941m.g
Citrus clementina
Ciclev10033941m.g
I
0.753
SapurV1A.0027s0350
Salix purpurea
SapurV1A.0027s0350
I
0.753
Eucgr.G03385
Eucalyptus grandis
Eucgr.G03385
I
0.750
cassava32908.m1
Manihot esculenta
cassava32908.m1
I
0.749
MTR_2g097910
Medicago truncatula
MTR_2g097910
I
0.749
evm.TU.supercontig_640.1
Carica papaya
evm.TU.supercontig_640.1
I
0.747
Lus10031850.g
Linum usitatissimum
Lus10031850.g
I
0.746
Lus10039610.g
Linum usitatissimum
Lus10039610.g
I
0.744
Lus10029520.g
Linum usitatissimum
Lus10029520.g
I
0.744
Gorai.004G037300
Gossypium raimondii
Gorai.004G037300
I
0.744
PGSC0003DMG400006868
Solanum tuberosum
PGSC0003DMG400006868
I
0.743
Solyc01g087130.2
Solanum lycopersicum
Solyc01g087130.2
I
0.743
GLYMA12G36630
Glycine max
GLYMA12G36630
I
0.740
PDK_20s1844641g001
Phoenix dactylifera
PDK_20s1844641g001
I
0.738
mgf024753m
Mimulus guttatus
mgf024753m
I
0.738
Bo3g008870
Brassica oleracea
Bo3g008870
I
0.737
Thhalv10015560m.g
Eutrema salsugineum
Thhalv10015560m.g
I
0.737
Cucsa.127860
Cucumis sativus
Cucsa.127860
I
0.737
Bo2g010970
Brassica oleracea
Bo2g010970
I
0.737
Bra006166
Brassica rapa
Bra006166
I
0.737
cassava39861.m1
Manihot esculenta
cassava39861.m1
I
0.735
GSMUA_Achr2G07780_001
Musa acuminata
GSMUA_Achr2G07780_001
I
0.732
MTR_3g028740
Medicago truncatula
MTR_3g028740
I
0.731
Gorai.004G172700
Gossypium raimondii
Gorai.004G172700
I
0.731
GLYMA13G27310
Glycine max
GLYMA13G27310
I
0.731
PGSC0003DMG400007360
Solanum tuberosum
PGSC0003DMG400007360
I
0.728
MDP0000736994
Malus domestica
MDP0000736994
I
0.728
Bo9g169270
Brassica oleracea
Bo9g169270
I
0.728
Cagra.1535s0018
Capsella grandiflora
Cagra.1535s0018
I
0.728
Carubv10001573m.g
Capsella rubella
Carubv10001573m.g
I
0.728
ATMYB46
Arabidopsis lyrata
scaffold_601291.1
I
0.728
MYB46
Arabidopsis thaliana
AT5G12870
D
0.728
Bostr.2902s0023
Boechera stricta
Bostr.2902s0023
I
0.728
GLYMA19G05080
Glycine max
GLYMA19G05080
I
0.728
Solyc11g065840.1
Solanum lycopersicum
Solyc11g065840.1
I
0.728
Bra008875
Brassica rapa
Bra008875
I
0.728
Pm016295
Prunus mume
Pm016295
I
0.725
PRUPE_ppa016923mg
Prunus persica
PRUPE_ppa016923mg
I
0.725
GSMUA_Achr8G31350_001
Musa acuminata
GSMUA_Achr8G31350_001
I
0.723
PK14287.1
Cannabis sativa
PK14287.1
I
0.723
Bra029696
Brassica rapa
Bra029696
I
0.715
Gorai.006G129100
Gossypium raimondii
Gorai.006G129100
I
0.715
MYB83
Arabidopsis thaliana
AT3G08500
D
0.715
Carubv10014093m.g
Capsella rubella
Carubv10014093m.g
I
0.715
MYB83
Arabidopsis lyrata
fgenesh2_kg.3__848__AT3G08500.1
I
0.715
Cagra.2991s0041
Capsella grandiflora
Cagra.2991s0041
I
0.715
Thhalv10021052m.g
Eutrema salsugineum
Thhalv10021052m.g
I
0.715
Bo5g139830
Brassica oleracea
Bo5g139830
I
0.715
Bo3g061630
Brassica oleracea
Bo3g061630
I
0.713
Sb08g016620
Sorghum bicolor
Sb08g016620
I
0.712
Pavir.Ca02370
Panicum virgatum
Pavir.Ca02370
I
0.712
GRMZM2G052606
Zea mays
GRMZM2G052606
I
0.712
TCM_040694
Theobroma cacao
TCM_040694
I
0.712
Bostr.22252s0219
Boechera stricta
Bostr.22252s0219
I
0.711
gene27001-v1.0-hybrid
Fragaria vesca
gene27001-v1.0-hybrid
I
0.706
evm.TU.supercontig_6.280
Carica papaya
evm.TU.supercontig_6.280
I
0.706
F775_06561
Aegilops tauschii
F775_06561
I
0.703
ORUFI12G15040
Oryza rufipogon
ORUFI12G15040
I
0.703
Pavir.Ia03281
Panicum virgatum
Pavir.Ia03281
I
0.703
Traes_5BS_2CB91C54A
Triticum aestivum
Traes_5BS_2CB91C54A
I
0.703
Si024786m.g
Setaria italica
Si024786m.g
I
0.703
OPUNC12G12380
Oryza punctata
OPUNC12G12380
I
0.703
ORGLA12G0120900
Oryza glaberrima
ORGLA12G0120900
I
0.703
Traes_5DS_AACA2EBA3
Triticum aestivum
Traes_5DS_AACA2EBA3
I
0.703
OMERI12G09660
Oryza meridionalis
OMERI12G09660
I
0.703
ONIVA05G29400
Oryza nivara
ONIVA05G29400
I
0.703
BGIOSGA036092
Oryza indica
BGIOSGA036092
I
0.703
OBART12G13720
Oryza barthii
OBART12G13720
I
0.703
OGLUM12G15400
Oryza glumaepatula
OGLUM12G15400
I
0.703
TRIUR3_33254
Triticum urartu
TRIUR3_33254
I
0.703
MLOC_66577
Hordeum vulgare
MLOC_66577
I
0.703
Traes_7AS_2EE7C2628
Triticum aestivum
Traes_7AS_2EE7C2628
I
0.701
Bra001284
Brassica rapa
Bra001284
I
0.697
BRADI4G06317
Brachypodium distachyon
BRADI4G06317
I
0.697
Bo5g009920
Brassica oleracea
Bo5g009920
I
0.692
Traes_3DL_46F83C41D
Triticum aestivum
Traes_3DL_46F83C41D
N
0.688
Lus10033473.g
Linum usitatissimum
Lus10033473.g
I
0.687
Lus10016413.g
Linum usitatissimum
Lus10016413.g
I
0.683
Bra020016
Brassica rapa
Bra020016
I
0.680
Lus10019707.g
Linum usitatissimum
Lus10019707.g
I
0.676
Thhalv10008000m.g
Eutrema salsugineum
Thhalv10008000m.g
I
0.670
cassava2597.m1
Manihot esculenta
cassava2597.m1
I
0.669
MYB61
Arabidopsis thaliana
AT1G09540
D
0.666
Carubv10009497m.g
Capsella rubella
Carubv10009497m.g
I
0.666
MYB61
Arabidopsis lyrata
scaffold_100991.1
I
0.666
Bostr.25494s0012
Boechera stricta
Bostr.25494s0012
I
0.666
Cagra.4395s0139
Capsella grandiflora
Cagra.4395s0139
I
0.666
Thhalv10023601m.g
Eutrema salsugineum
Thhalv10023601m.g
I
0.662