Pm012272 (Prunus mume)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pm012272 T283518_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB46
M00877_2.00
Arabidopsis thaliana
NAMCNDHHN

NDDHNGKTN
PBM
Franco-Zorrilla et al.(2014)
MYB46
0.728 0.911
MYB46
M11046_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATMYB46_Q6
0.728 0.911
MYB83
M01073_2.00
Arabidopsis thaliana
YACCHACC

GGTDGGTR
PBM
Sullivan et al.(2014)
pTH7140
0.715 0.873
MYB83
M07066_2.00
Arabidopsis thaliana
YCACCAACHNH

DNDGTTGGTGR
Dap-seq
OMalley et al.(2016)
MYB83_col_a
0.715 0.873
MYB83
M07067_2.00
Arabidopsis thaliana
NCACCWAMCDNHNNN

NNNDNHGKTWGGTGN
Dap-seq
OMalley et al.(2016)
MYB83_colamp_a
0.715 0.873
MYB61
M07002_2.00
Arabidopsis thaliana
HNYAMCHACCDNHNH

DNDNHGGTDGKTRND
Dap-seq
OMalley et al.(2016)
MYB61_col_a
0.666 0.759
MYB61
M07003_2.00
Arabidopsis thaliana
NHNYACCWAMCDH

DHGKTWGGTRNDN
Dap-seq
OMalley et al.(2016)
MYB61_colamp_a
0.666 0.759
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm012272 Myb 3 36
Pm012272 Myb 42 87

Links

Other Myb/SANT family TFs
Other Prunus mume TFs

129 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
MYB61 Arabidopsis thaliana AT1G09540 D 0.666
MYB83 Arabidopsis thaliana AT3G08500 D 0.715
MYB46 Arabidopsis thaliana AT5G12870 D 0.728
Cla008683 Citrullus lanatus Cla008683 I 0.814
Carubv10014093m.g Capsella rubella Carubv10014093m.g I 0.715
Carubv10009497m.g Capsella rubella Carubv10009497m.g I 0.666
Carubv10001573m.g Capsella rubella Carubv10001573m.g I 0.728
Cagra.4395s0139 Capsella grandiflora Cagra.4395s0139 I 0.666
Cagra.2991s0041 Capsella grandiflora Cagra.2991s0041 I 0.715
Ciclev10017658m.g Citrus clementina Ciclev10017658m.g I 0.793
Ciclev10033941m.g Citrus clementina Ciclev10033941m.g I 0.753
Eucgr.B03684 Eucalyptus grandis Eucgr.B03684 I 0.793
Eucgr.G03385 Eucalyptus grandis Eucgr.G03385 I 0.750
evm.TU.supercontig_6.280 Carica papaya evm.TU.supercontig_6.280 I 0.706
evm.TU.supercontig_640.1 Carica papaya evm.TU.supercontig_640.1 I 0.747
evm.TU.supercontig_84.59 Carica papaya evm.TU.supercontig_84.59 I 0.793
gene14666-v1.0-hybrid Fragaria vesca gene14666-v1.0-hybrid I 0.787
Cagra.1535s0018 Capsella grandiflora Cagra.1535s0018 I 0.728
Bostr.2902s0023 Boechera stricta Bostr.2902s0023 I 0.728
Bostr.25494s0012 Boechera stricta Bostr.25494s0012 I 0.666
Cla017541 Citrullus lanatus Cla017541 I 0.805
Pm016295 Prunus mume Pm016295 I 0.725
cassava2597.m1 Manihot esculenta cassava2597.m1 I 0.669
cassava30676.valid.m1 Manihot esculenta cassava30676.valid.m1 I 0.823
cassava32908.m1 Manihot esculenta cassava32908.m1 I 0.749
cassava39861.m1 Manihot esculenta cassava39861.m1 I 0.735
cassava5203.m1 Manihot esculenta cassava5203.m1 I 0.814
Cucsa.065530 Cucumis sativus Cucsa.065530 I 0.814
Cucsa.127860 Cucumis sativus Cucsa.127860 I 0.737
Cucsa.195180 Cucumis sativus Cucsa.195180 I 0.805
mgf024753m Mimulus guttatus mgf024753m I 0.738
Aquca_014_00829 Aquilegia coerulea Aquca_014_00829 I 0.763
Bostr.22252s0219 Boechera stricta Bostr.22252s0219 I 0.711
gene27001-v1.0-hybrid Fragaria vesca gene27001-v1.0-hybrid I 0.706
Gorai.001G138800 Gossypium raimondii Gorai.001G138800 I 0.760
Gorai.004G037300 Gossypium raimondii Gorai.004G037300 I 0.744
orange1.1g021164m.g Citrus sinensis orange1.1g021164m.g I 0.793
Pavir.Ca02370 Panicum virgatum Pavir.Ca02370 I 0.712
Pavir.Ia03281 Panicum virgatum Pavir.Ia03281 I 0.703
SapurV1A.0027s0350 Salix purpurea SapurV1A.0027s0350 I 0.753
SapurV1A.0534s0230 Salix purpurea SapurV1A.0534s0230 I 0.798
SapurV1A.0925s0070 Salix purpurea SapurV1A.0925s0070 I 0.783
Thhalv10008000m.g Eutrema salsugineum Thhalv10008000m.g I 0.670
Thhalv10015560m.g Eutrema salsugineum Thhalv10015560m.g I 0.737
Thhalv10021052m.g Eutrema salsugineum Thhalv10021052m.g I 0.715
Thhalv10023601m.g Eutrema salsugineum Thhalv10023601m.g I 0.662
PK13930.1 Cannabis sativa PK13930.1 I 0.813
PK14287.1 Cannabis sativa PK14287.1 I 0.723
LjSGA_026563.1 Lotus japonicus LjSGA_026563.1 I 0.897
orange1.1g019619m.g Citrus sinensis orange1.1g019619m.g I 0.753
MDP0000736994 Malus domestica MDP0000736994 I 0.728
MDP0000722954 Malus domestica MDP0000722954 I 0.823
Gorai.004G172700 Gossypium raimondii Gorai.004G172700 I 0.731
Gorai.006G129100 Gossypium raimondii Gorai.006G129100 I 0.715
Gorai.013G251100 Gossypium raimondii Gorai.013G251100 I 0.760
Lus10002559.g Linum usitatissimum Lus10002559.g I 0.755
Lus10016413.g Linum usitatissimum Lus10016413.g I 0.683
Lus10019707.g Linum usitatissimum Lus10019707.g I 0.676
Lus10027369.g Linum usitatissimum Lus10027369.g I 0.763
Lus10029520.g Linum usitatissimum Lus10029520.g I 0.744
Lus10031281.g Linum usitatissimum Lus10031281.g I 0.810
Lus10031850.g Linum usitatissimum Lus10031850.g I 0.746
Lus10033473.g Linum usitatissimum Lus10033473.g I 0.687
Lus10039610.g Linum usitatissimum Lus10039610.g I 0.744
MDP0000204495 Malus domestica MDP0000204495 I 0.823
PDK_20s1844641g001 Phoenix dactylifera PDK_20s1844641g001 I 0.738
AMTR_s00022p00252530 Amborella trichopoda AMTR_s00022p00252530 I 0.756
GLYMA12G06180 Glycine max GLYMA12G06180 I 0.806
GLYMA12G36630 Glycine max GLYMA12G36630 I 0.740
GLYMA13G07020 Glycine max GLYMA13G07020 I 0.753
GLYMA13G27310 Glycine max GLYMA13G27310 I 0.731
GLYMA13G41470 Glycine max GLYMA13G41470 I 0.801
GLYMA15G03920 Glycine max GLYMA15G03920 I 0.801
GLYMA19G05080 Glycine max GLYMA19G05080 I 0.728
GRMZM2G052606 Zea mays GRMZM2G052606 I 0.712
GSMUA_Achr2G07780_001 Musa acuminata GSMUA_Achr2G07780_001 I 0.732
GSMUA_Achr8G31350_001 Musa acuminata GSMUA_Achr8G31350_001 I 0.723
GSMUA_AchrUn_randomG21080_001 Musa acuminata GSMUA_AchrUn_randomG21080_001 I 0.756
MLOC_66577 Hordeum vulgare MLOC_66577 I 0.703
MTR_2g097910 Medicago truncatula MTR_2g097910 I 0.749
GLYMA11G14200 Glycine max GLYMA11G14200 I 0.798
MYB83 Arabidopsis lyrata fgenesh2_kg.3__848__AT3G08500.1 I 0.715
F775_06561 Aegilops tauschii F775_06561 I 0.703
BGIOSGA036092 Oryza indica BGIOSGA036092 I 0.703
Bo2g010970 Brassica oleracea Bo2g010970 I 0.737
Bo3g008870 Brassica oleracea Bo3g008870 I 0.737
Bo3g061630 Brassica oleracea Bo3g061630 I 0.713
Bo5g009920 Brassica oleracea Bo5g009920 I 0.692
Bo5g139830 Brassica oleracea Bo5g139830 I 0.715
Bo9g169270 Brassica oleracea Bo9g169270 I 0.728
Bra001284 Brassica rapa Bra001284 I 0.697
Bra006166 Brassica rapa Bra006166 I 0.737
Bra008875 Brassica rapa Bra008875 I 0.728
Bra020016 Brassica rapa Bra020016 I 0.680
Bra029696 Brassica rapa Bra029696 I 0.715
BRADI4G06317 Brachypodium distachyon BRADI4G06317 I 0.697
MTR_3g028740 Medicago truncatula MTR_3g028740 I 0.731
MTR_4g065017 Medicago truncatula MTR_4g065017 I 0.798
OB12G21380 Oryza brachyantha OB12G21380 I 0.757
Sb08g016620 Sorghum bicolor Sb08g016620 I 0.712
MYB61 Arabidopsis lyrata scaffold_100991.1 I 0.666
ATMYB46 Arabidopsis lyrata scaffold_601291.1 I 0.728
Si024786m.g Setaria italica Si024786m.g I 0.703
Solyc01g087130.2 Solanum lycopersicum Solyc01g087130.2 I 0.743
Solyc11g065840.1 Solanum lycopersicum Solyc11g065840.1 I 0.728
TCM_005885 Theobroma cacao TCM_005885 I 0.763
TCM_040694 Theobroma cacao TCM_040694 I 0.712
Traes_5BS_2CB91C54A Triticum aestivum Traes_5BS_2CB91C54A I 0.703
Traes_5DS_AACA2EBA3 Triticum aestivum Traes_5DS_AACA2EBA3 I 0.703
Traes_7AS_2EE7C2628 Triticum aestivum Traes_7AS_2EE7C2628 I 0.701
TRIUR3_33254 Triticum urartu TRIUR3_33254 I 0.703
VIT_06s0004g02110 Vitis vinifera VIT_06s0004g02110 I 0.823
PRUPE_ppa016923mg Prunus persica PRUPE_ppa016923mg I 0.725
PRUPE_ppa009566mg Prunus persica PRUPE_ppa009566mg I 0.823
OBART12G13720 Oryza barthii OBART12G13720 I 0.703
OGLUM12G15400 Oryza glumaepatula OGLUM12G15400 I 0.703
OMERI12G09660 Oryza meridionalis OMERI12G09660 I 0.703
ONIVA05G29400 Oryza nivara ONIVA05G29400 I 0.703
OPUNC12G12380 Oryza punctata OPUNC12G12380 I 0.703
ORGLA12G0120900 Oryza glaberrima ORGLA12G0120900 I 0.703
ORUFI12G15040 Oryza rufipogon ORUFI12G15040 I 0.703
PGSC0003DMG400006868 Solanum tuberosum PGSC0003DMG400006868 I 0.743
PGSC0003DMG400007360 Solanum tuberosum PGSC0003DMG400007360 I 0.728
POPTR_0001s26590 Populus trichocarpa POPTR_0001s26590 I 0.783
POPTR_0001s27430 Populus trichocarpa POPTR_0001s27430 I 0.753
POPTR_0009s05860 Populus trichocarpa POPTR_0009s05860 I 0.798
POPTR_0009s06630 Populus trichocarpa POPTR_0009s06630 I 0.753
MYB83 Vitis vinifera VIT_13s0064g00960 I 0.849
Traes_3DL_46F83C41D Triticum aestivum Traes_3DL_46F83C41D N 0.688