Pm018338 (Prunus mume)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pm018338 T283565_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q2TCH0_PETHY
M11072_2.00
Petunia x hybrida Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PH4_01
0.774 0.828
MYB4
M02303_2.00
Arabidopsis thaliana
YACCWACY

RGTWGGTR
PBM
Weirauch et al.(2014)
pTH7075
0.714 0.774
MYB4
M07115_2.00
Arabidopsis thaliana
NYYACCWAMHWHNDD

HHNDWDKTWGGTRRN
Dap-seq
OMalley et al.(2016)
MYB4_col200_a
0.714 0.774
MYB3
M02288_2.00
Arabidopsis thaliana
NNYACCTACCN

NGGTAGGTRNN
PBM
Weirauch et al.(2014)
pTH7125
0.710 0.763
MYB62
M07027_2.00
Arabidopsis thaliana
NHRCCTAAYTWNHNN

NNDNWARTTAGGYDN
Dap-seq
OMalley et al.(2016)
MYB62_col_a
0.695 0.688
MYB62
M07028_2.00
Arabidopsis thaliana
HNKRCCTAACTHH

DDAGTTAGGYMND
Dap-seq
OMalley et al.(2016)
MYB62_colamp_a
0.695 0.688
WER
M11047_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WEREWOLF_Q2_01
0.692 0.710
WER
M11048_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$WEREWOLF_Q2
0.692 0.710
MYB111
M00882_2.00
Arabidopsis thaliana
NNNAMCDAMY

RKTHGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB111
0.677 0.796
GRMZM2G005066
M11056_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$C1_Q2
0.664 0.699
MYB23
M07133_2.00
Arabidopsis thaliana
HCAACWAHHHH

DDDDTWGTTGD
Dap-seq
OMalley et al.(2016)
MYB23_col_a
0.662 0.699
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm018338 Myb 14 61
Pm018338 Myb 67 112

Links

Other Myb/SANT family TFs
Other Prunus mume TFs

806 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AGABI2DRAFT_67224 Agaricus bisporus AGABI2DRAFT_67224 N 0.000
CERSUDRAFT_80391 Ceriporiopsis subvermispora CERSUDRAFT_80391 N 0.000
CNG03860 Cryptococcus neoformans CNG03860 N 0.000
CY34DRAFT_797726 Suillus luteus CY34DRAFT_797726 N 0.000
DICSQDRAFT_106324 Dichomitus squalens DICSQDRAFT_106324 N 0.000
estExt_Genewise1.C_40657 Heterobasidion annosum estExt_Genewise1.C_40657 N 0.000
FOMPIDRAFT_149991 Fomitopsis pinicola FOMPIDRAFT_149991 N 0.000
GALMADRAFT_236024 Galerina marginata GALMADRAFT_236024 N 0.000
GLOTRDRAFT_55410 Gloeophyllum trabeum GLOTRDRAFT_55410 N 0.000
gw1.2.905.1 Tremella mesenterica gw1.2.905.1 N 0.000
HETIRDRAFT_381259 Heterobasidion irregulare HETIRDRAFT_381259 N 0.000
JAAARDRAFT_28196 Jaapia argillacea JAAARDRAFT_28196 N 0.000
K443DRAFT_88544 Laccaria amethystina K443DRAFT_88544 N 0.000
L804_03480 Cryptococcus gattii L804_03480 N 0.000
LACBIDRAFT_311840 Laccaria bicolor LACBIDRAFT_311840 N 0.000
M378DRAFT_72501 Amanita muscaria M378DRAFT_72501 N 0.000
M404DRAFT_19687 Pisolithus tinctorius M404DRAFT_19687 N 0.000
M413DRAFT_441197 Hebeloma cylindrosporum M413DRAFT_441197 N 0.000
Moror_7396 Moniliophthora roreri Moror_7396 N 0.000
PAXRUDRAFT_826859 Paxillus rubicundulus PAXRUDRAFT_826859 N 0.000
PHACADRAFT_250787 Phanerochaete carnosa PHACADRAFT_250787 N 0.000
PHLGIDRAFT_22320 Phlebiopsis gigantea PHLGIDRAFT_22320 N 0.000
PISMIDRAFT_639669 Pisolithus microcarpus PISMIDRAFT_639669 N 0.000
PLEOSDRAFT_1039663 Pleurotus ostreatus PLEOSDRAFT_1039663 N 0.000
SCLCIDRAFT_1210097 Scleroderma citrinum SCLCIDRAFT_1210097 N 0.000
SERLA73DRAFT_104045 Serpula lacrymans SERLA73DRAFT_104045 N 0.000