Pm028732 (Prunus mume)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pm028732 T283642_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RVE1
M00879_2.00
Arabidopsis thaliana
AAATATCT

AGATATTT
PBM
Franco-Zorrilla et al.(2014)
RVE1
0.816 0.870
RVE1
M07128_2.00
Arabidopsis thaliana
NNNWAAATATCTNN

NNAGATATTTWNNN
Dap-seq
OMalley et al.(2016)
RVE1_col_a
0.816 0.870
RVE1
M07129_2.00
Arabidopsis thaliana
NNWAATATCW

WGATATTWNN
Dap-seq
OMalley et al.(2016)
RVE1_colamp_a
0.816 0.870
OS08G0157600
M02330_2.00
Oryza sativa
DNRTATCHN

NDGATAYNH
PBM
Weirauch et al.(2014)
pTH7793
0.816 0.913
LHY
M06997_2.00
Arabidopsis thaliana
NWAAATATCT

AGATATTTWN
Dap-seq
OMalley et al.(2016)
LHY1_col_a
0.808 0.891
LHY
M06998_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
LHY1_colamp_a
0.808 0.891
PK08316.1
M02350_2.00
Cannabis sativa
NNNRWATCNN

NNGATWYNNN
PBM
Weirauch et al.(2014)
pTH9488
0.780 0.826
CCA1
M00875_2.00
Arabidopsis thaliana
NDNRWATCN

NGATWYNHN
PBM
Franco-Zorrilla et al.(2014)
CCA1
0.771 0.848
CCA1
M11039_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CCA1_Q5
0.771 0.848
RVE7
M01069_2.00
Arabidopsis thaliana
NDHRWATCNN

NNGATWYDHN
PBM
Sullivan et al.(2014)
pTH7081
0.716 0.783
RVE7
M02286_2.00
Arabidopsis thaliana
NDARTATCH

DGATAYTHN
PBM
Weirauch et al.(2014)
pTH7277
0.716 0.783
RVE7L
M07071_2.00
Arabidopsis thaliana
NNNNWAAATATCWNN

NNWGATATTTWNNNN
Dap-seq
OMalley et al.(2016)
AT3G10113_col_a
0.716 0.783
RVE7
M07008_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
EPR1_colamp_a
0.716 0.783
RVE7
M07009_2.00
Arabidopsis thaliana
NWAAATATCTHN

NDAGATATTTWN
Dap-seq
OMalley et al.(2016)
EPR1_col
0.716 0.783
RVE5
M01079_2.00
Arabidopsis thaliana
NWAATATCHN

NDGATATTWN
PBM
Sullivan et al.(2014)
pTH7138
0.696 0.652
RVE5
M07100_2.00
Arabidopsis thaliana
NNAAAATATCT

AGATATTTTNN
Dap-seq
OMalley et al.(2016)
At4g01280_col_a
0.696 0.652
RVE5
M07101_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a
0.696 0.652
RVE6
M01081_2.00
Arabidopsis thaliana
AATATCTD

HAGATATT
PBM
Sullivan et al.(2014)
pTH7151
0.665 0.652
RVE6
M07138_2.00
Arabidopsis thaliana
NNAAAATATCT

AGATATTTTNN
Dap-seq
OMalley et al.(2016)
At5g52660_col_a
0.665 0.652
RVE6
M07139_2.00
Arabidopsis thaliana
NNNWAAATATCT

AGATATTTWNNN
Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a
0.665 0.652
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm028732 Myb 57 102

Links

Other Myb/SANT family TFs
Other Prunus mume TFs

Invalid Input OrderBy

303 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action