Q948S6_TOBAC (Nicotiana tabacum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Q948S6_TOBAC T283698_2.00 HughesLab (2013-Jun-13)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q948S6_TOBAC
M11075_2.00		 Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA1_01		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.701 0.827
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.690 0.820
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.680 0.791
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.680 0.791
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Q948S6_TOBAC Myb 34 80
Q948S6_TOBAC Myb 86 132
Q948S6_TOBAC Myb 138 182

Links

Other Myb/SANT family TFs
Other Nicotiana tabacum TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc11g071300.1 Solanum lycopersicum Solyc11g071300.1 I 0.824
PGSC0003DMG400018588 Solanum tuberosum PGSC0003DMG400018588 I 0.796
Gorai.001G028200 Gossypium raimondii Gorai.001G028200 I 0.706
MDP0000179225 Malus domestica MDP0000179225 I 0.704
GLYMA06G08660 Glycine max GLYMA06G08660 I 0.703
mgf008601m Mimulus guttatus mgf008601m I 0.703
GLYMA04G08550 Glycine max GLYMA04G08550 I 0.703
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.701
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.698
mgf019610m Mimulus guttatus mgf019610m I 0.698
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.698
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.696
Ca_14925 Cicer arietinum Ca_14925 I 0.693
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.693
PK12011.1 Cannabis sativa PK12011.1 D 0.690
PK22174.1 Cannabis sativa PK22174.1 I 0.688
MTR_1g026870 Medicago truncatula MTR_1g026870 I 0.688
evm.TU.supercontig_228.17 Carica papaya evm.TU.supercontig_228.17 I 0.687
Eucgr.K03133 Eucalyptus grandis Eucgr.K03133 I 0.687
MDP0000295807 Malus domestica MDP0000295807 I 0.685
MTR_3g110028 Medicago truncatula MTR_3g110028 I 0.685
Ca_01884 Cicer arietinum Ca_01884 I 0.684
Bo3g007070 Brassica oleracea Bo3g007070 I 0.683
Bo3g179620 Brassica oleracea Bo3g179620 I 0.683
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.682
Cucsa.311420 Cucumis sativus Cucsa.311420 I 0.682
Cla023357 Citrullus lanatus Cla023357 I 0.682
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.682
TCM_047091 Theobroma cacao TCM_047091 I 0.682
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.680
Solyc08g068320.2 Solanum lycopersicum Solyc08g068320.2 I 0.680
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.680
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.680
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.680
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.680
Cla022565 Citrullus lanatus Cla022565 I 0.680
TCM_021936 Theobroma cacao TCM_021936 I 0.680
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.680
Thhalv10012583m.g Eutrema salsugineum Thhalv10012583m.g I 0.677
LjT22I05.60.nd Lotus japonicus LjT22I05.60.nd I 0.677
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.676
Bra011376 Brassica rapa Bra011376 I 0.676
Bo1g010040 Brassica oleracea Bo1g010040 I 0.676
Pm005124 Prunus mume Pm005124 I 0.675
Bra006102 Brassica rapa Bra006102 I 0.673
Cagra.4093s0003 Capsella grandiflora Cagra.4093s0003 I 0.670
Carubv10004063m.g Capsella rubella Carubv10004063m.g I 0.670
Bo3g171130 Brassica oleracea Bo3g171130 I 0.669
Bo7g115810 Brassica oleracea Bo7g115810 I 0.669
Bra034531 Brassica rapa Bra034531 I 0.669
Carubv10013377m.g Capsella rubella Carubv10013377m.g I 0.669
Cagra.2515s0028 Capsella grandiflora Cagra.2515s0028 I 0.669
29794.m003447 Ricinus communis 29794.m003447 I 0.668
VIT_11s0016g03750 Vitis vinifera VIT_11s0016g03750 I 0.668
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.667
OS12G0238000 Oryza sativa OS12G0238000 I 0.667
OB12G16480 Oryza brachyantha OB12G16480 I 0.667
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.665
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.664
GSMUA_Achr10G26610_001 Musa acuminata GSMUA_Achr10G26610_001 I 0.662
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.661
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.661