29681.m001296 (Ricinus communis)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 29681.m001296 T283767_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK27693.1
M01285_2.00
Cannabis sativa
NNYTATCBNN

NNVGATARNN
PBM
Lambert et al.(2019)
pTH11302
0.808 0.894
PK27213.1
M01284_2.00
Cannabis sativa
NHWATCNNNN

NNNNGATWDN
PBM
Lambert et al.(2019)
pTH10196
0.799 0.883
PK27213.1
M02356_2.00
Cannabis sativa
NHHATCNNNN

NNNNGATDDN
PBM
Weirauch et al.(2014)
pTH9600
0.799 0.883
AT2G38090
M07055_2.00
Arabidopsis thaliana
HHBAWNYTTATCYWNWHYNBN

NVNRDWNWRGATAARNWTVDD
Dap-seq
OMalley et al.(2016)
At2g38090_col_a
0.777 0.883
AT5G58900
M07146_2.00
Arabidopsis thaliana
HHWWYCTTATCYWHW

WDWRGATAAGRWWDD
Dap-seq
OMalley et al.(2016)
At5g58900_col_a
0.718 0.862
AT5G58900
M07147_2.00
Arabidopsis thaliana
HWYMTTATCHWNWWH

DWWNWDGATAAKRWD
Dap-seq
OMalley et al.(2016)
At5g58900_colamp_a
0.718 0.862
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29681.m001296 Myb 133 180

Links

Other Myb/SANT family TFs
Other Ricinus communis TFs

124 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMEM007577 Anopheles merus AMEM007577 N 0.000
ANCDUO_13707 Ancylostoma duodenale ANCDUO_13707 N 0.000
Bm4268 Brugia malayi Bm4268 N 0.000
CGI_10022678 Crassostrea gigas CGI_10022678 N 0.000
EEL_0000200601 Elaeophora elaphi EEL_0000200601 N 0.000
estExt_fgenesh2_pg.C_5980016 Branchiostoma floridae estExt_fgenesh2_pg.C_5980016 N 0.000
estExt_gwp.C_5980021 Branchiostoma floridae estExt_gwp.C_5980021 N 0.000
GPLIN_000814800 Globodera pallida GPLIN_000814800 N 0.000
GPLIN_001349600 Globodera pallida GPLIN_001349600 N 0.000
HPBE_0001834901 Heligmosomoides bakeri HPBE_0001834901 N 0.000
L892_g7301 Steinernema scapterisci L892_g7301 N 0.000
L898_g12863 Steinernema monticolum L898_g12863 N 0.000
maker-nMf.1.1.scaf02509-snap-gene-0.6 Meloidogyne floridensis maker-nMf.1.1.scaf02509-snap-gene-0.6 N 0.000
MESCA002178 Megaselia scalaris MESCA002178 N 0.000
MYT1L Macaca mulatta ENSMMUG00000009310 I 0.000
MYT1L Homo sapiens ENSG00000186487 I 0.000
MYT1L Callithrix jacchus ENSCJAG00000007286 N 0.000
nOo.2.0.1.g09682 Onchocerca ochengi nOo.2.0.1.g09682 N 0.000
Ocbimv22011176m.g Octopus bimaculoides Ocbimv22011176m.g N 0.000
PPAI004584 Phlebotomus papatasi PPAI004584 N 0.000
PXEA_0001827501 Protopolystoma xenopodis PXEA_0001827501 N 0.000
SVUK_0001589601 Strongylus vulgaris SVUK_0001589601 N 0.000
TsM_000155300 Taenia solium TsM_000155300 N 0.000
WUBG_11438 Wuchereria bancrofti WUBG_11438 N 0.000