29794.m003447 (Ricinus communis)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 29794.m003447 T283794_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PC-MYB1
M07110_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN

NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R1_col_a
0.844 0.892
PC-MYB1
M07111_2.00
Arabidopsis thaliana
DWHNTDRCCGTTR

YAACGGYHANDWH
Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a
0.844 0.892
Q948S5_TOBAC
M11074_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBA2_01
0.839 0.935
PK12011.1
M01279_2.00
Cannabis sativa
HAACGGHHNN

NNDDCCGTTD
PBM
Lambert et al.(2019)
pTH11423
0.809 0.914
MYB3R4
M07125_2.00
Arabidopsis thaliana
NDWWNTDRCCGTTRN

NYAACGGYHANWWHN
Dap-seq
OMalley et al.(2016)
MYB3R4_col_a
0.804 0.878
Q948S4_TOBAC
M11073_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBB_01
0.669 0.741
Q948S6_TOBAC
M11075_2.00
Nicotiana tabacum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYBA1_01
0.668 0.813
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
29794.m003447 Myb 39 85
29794.m003447 Myb 91 137
29794.m003447 Myb 143 187

Links

Other Myb/SANT family TFs
Other Ricinus communis TFs

Invalid Input OrderBy

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action